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PROCA1 (protein interacting with cyclin A1)

Identity

Alias_symbol (synonym)MGC39650
Other alias-
HGNC (Hugo) PROCA1
LocusID (NCBI) 147011
Atlas_Id 72237
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28703197 and ends at 28711907 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PROCA1   28600
Cards
Entrez_Gene (NCBI)PROCA1  147011  protein interacting with cyclin A1
Aliases
GeneCards (Weizmann)PROCA1
Ensembl hg19 (Hinxton)ENSG00000167525 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167525 [Gene_View]  chr17:28703197-28711907 [Contig_View]  PROCA1 [Vega]
ICGC DataPortalENSG00000167525
TCGA cBioPortalPROCA1
AceView (NCBI)PROCA1
Genatlas (Paris)PROCA1
WikiGenes147011
SOURCE (Princeton)PROCA1
Genetics Home Reference (NIH)PROCA1
Genomic and cartography
GoldenPath hg38 (UCSC)PROCA1  -     chr17:28703197-28711907 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PROCA1  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblPROCA1 - 17q11.2 [CytoView hg19]  PROCA1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIPROCA1 [Mapview hg19]  PROCA1 [Mapview hg38]
OMIM617376   
Gene and transcription
Genbank (Entrez)AI797917 AK301868 AK310299 AL137531 AY601916
RefSeq transcript (Entrez)NM_001304949 NM_001304951 NM_001304952 NM_001304953 NM_001304954 NM_152465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PROCA1
Cluster EST : UnigeneHs.207471 [ NCBI ]
CGAP (NCI)Hs.207471
Alternative Splicing GalleryENSG00000167525
Gene ExpressionPROCA1 [ NCBI-GEO ]   PROCA1 [ EBI - ARRAY_EXPRESS ]   PROCA1 [ SEEK ]   PROCA1 [ MEM ]
Gene Expression Viewer (FireBrowse)PROCA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147011
GTEX Portal (Tissue expression)PROCA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCQ7
Splice isoforms : SwissVarQ8NCQ7
PhosPhoSitePlusQ8NCQ7
Domains : Interpro (EBI)PLipase_A2_dom   
Domain families : Pfam (Sanger)Phospholip_A2_2 (PF05826)   
Domain families : Pfam (NCBI)pfam05826   
Conserved Domain (NCBI)PROCA1
DMDM Disease mutations147011
Blocks (Seattle)PROCA1
SuperfamilyQ8NCQ7
Human Protein AtlasENSG00000167525
Peptide AtlasQ8NCQ7
HPRD07131
IPIIPI00893455   IPI00168423   IPI01014643   IPI00449307   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCQ7
IntAct (EBI)Q8NCQ7
FunCoupENSG00000167525
BioGRIDPROCA1
STRING (EMBL)PROCA1
ZODIACPROCA1
Ontologies - Pathways
QuickGOQ8NCQ7
Ontology : AmiGOphospholipase A2 activity  phospholipid metabolic process  arachidonic acid secretion  
Ontology : EGO-EBIphospholipase A2 activity  phospholipid metabolic process  arachidonic acid secretion  
NDEx NetworkPROCA1
Atlas of Cancer Signalling NetworkPROCA1
Wikipedia pathwaysPROCA1
Orthology - Evolution
OrthoDB147011
GeneTree (enSembl)ENSG00000167525
Phylogenetic Trees/Animal Genes : TreeFamPROCA1
HOVERGENQ8NCQ7
HOGENOMQ8NCQ7
Homologs : HomoloGenePROCA1
Homology/Alignments : Family Browser (UCSC)PROCA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPROCA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PROCA1
dbVarPROCA1
ClinVarPROCA1
1000_GenomesPROCA1 
Exome Variant ServerPROCA1
ExAC (Exome Aggregation Consortium)PROCA1 (select the gene name)
Genetic variants : HAPMAP147011
Genomic Variants (DGV)PROCA1 [DGVbeta]
DECIPHERPROCA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPROCA1 
Mutations
ICGC Data PortalPROCA1 
TCGA Data PortalPROCA1 
Broad Tumor PortalPROCA1
OASIS PortalPROCA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPROCA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPROCA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PROCA1
DgiDB (Drug Gene Interaction Database)PROCA1
DoCM (Curated mutations)PROCA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PROCA1 (select a term)
intoGenPROCA1
Cancer3DPROCA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617376   
Orphanet
MedgenPROCA1
Genetic Testing Registry PROCA1
NextProtQ8NCQ7 [Medical]
TSGene147011
GENETestsPROCA1
Target ValidationPROCA1
Huge Navigator PROCA1 [HugePedia]
snp3D : Map Gene to Disease147011
BioCentury BCIQPROCA1
ClinGenPROCA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147011
Chemical/Pharm GKB GenePA165432492
Clinical trialPROCA1
Miscellaneous
canSAR (ICR)PROCA1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePROCA1
EVEXPROCA1
GoPubMedPROCA1
iHOPPROCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:19 CEST 2017

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