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PROM1 (prominin 1)

Identity

Other namesAC133
CD133
CORD12
MCDR2
PROML1
RP41
STGD4
HGNC (Hugo) PROM1
LocusID (NCBI) 8842
Location 4p15.32
Location_base_pair Starts at 15969849 and ends at 16085594 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PROM1   9454
Cards
Entrez_Gene (NCBI)PROM1  8842  prominin 1
GeneCards (Weizmann)PROM1
Ensembl (Hinxton)ENSG00000007062 [Gene_View]  chr4:15969849-16085594 [Contig_View]  PROM1 [Vega]
ICGC DataPortalENSG00000007062
AceView (NCBI)PROM1
Genatlas (Paris)PROM1
WikiGenes8842
SOURCE (Princeton)NM_001145847 NM_001145848 NM_001145849 NM_001145850 NM_001145851 NM_001145852 NM_006017
Genomic and cartography
GoldenPath (UCSC)PROM1  -  4p15.32   chr4:15969849-16085594 -  4p15.32   [Description]    (hg19-Feb_2009)
EnsemblPROM1 - 4p15.32 [CytoView]
Mapping of homologs : NCBIPROM1 [Mapview]
OMIM603786   604365   608051   612095   612657   
Gene and transcription
Genbank (Entrez)AA622198 AF027208 AF117225 AF507034 AK025391
RefSeq transcript (Entrez)NM_001145847 NM_001145848 NM_001145849 NM_001145850 NM_001145851 NM_001145852 NM_006017
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_011696 NT_006316 NW_001838900 NW_004929315
Consensus coding sequences : CCDS (NCBI)PROM1
Cluster EST : UnigeneHs.614734 [ NCBI ]
CGAP (NCI)Hs.614734
Alternative Splicing : Fast-db (Paris)GSHG0023150
Alternative Splicing GalleryENSG00000007062
Gene ExpressionPROM1 [ NCBI-GEO ]     PROM1 [ SEEK ]   PROM1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43490 (Uniprot)
NextProtO43490  [Medical]
With graphics : InterProO43490
Splice isoforms : SwissVarO43490 (Swissvar)
Domains : Interpro (EBI)Prominin   
Related proteins : CluSTrO43490
Domain families : Pfam (Sanger)Prominin (PF05478)   
Domain families : Pfam (NCBI)pfam05478   
DMDM Disease mutations8842
Blocks (Seattle)O43490
Human Protein AtlasENSG00000007062
Peptide AtlasO43490
HPRD05079
IPIIPI00012540   IPI00925225   IPI00971071   IPI00925467   IPI00926171   IPI00925712   IPI00925014   IPI00964468   IPI00967241   
Protein Interaction databases
DIP (DOE-UCLA)O43490
IntAct (EBI)O43490
FunCoupENSG00000007062
BioGRIDPROM1
IntegromeDBPROM1
STRING (EMBL)PROM1
Ontologies - Pathways
QuickGOO43490
Ontology : AmiGOphotoreceptor outer segment  protein binding  extracellular space  plasma membrane  integral component of plasma membrane  brush border  cell surface  retina layer formation  apical plasma membrane  microvillus membrane  stereocilium  photoreceptor outer segment membrane  actinin binding  cadherin binding  photoreceptor cell maintenance  retina morphogenesis in camera-type eye  camera-type eye photoreceptor cell differentiation  camera-type eye photoreceptor cell differentiation  extracellular vesicular exosome  glomerular visceral epithelial cell differentiation  glomerular parietal epithelial cell differentiation  positive regulation of nephron tubule epithelial cell differentiation  
Ontology : EGO-EBIphotoreceptor outer segment  protein binding  extracellular space  plasma membrane  integral component of plasma membrane  brush border  cell surface  retina layer formation  apical plasma membrane  microvillus membrane  stereocilium  photoreceptor outer segment membrane  actinin binding  cadherin binding  photoreceptor cell maintenance  retina morphogenesis in camera-type eye  camera-type eye photoreceptor cell differentiation  camera-type eye photoreceptor cell differentiation  extracellular vesicular exosome  glomerular visceral epithelial cell differentiation  glomerular parietal epithelial cell differentiation  positive regulation of nephron tubule epithelial cell differentiation  
Pathways : KEGGTranscriptional misregulation in cancer   
Protein Interaction DatabasePROM1
Wikipedia pathwaysPROM1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PROM1
SNP (GeneSNP Utah)PROM1
SNP : HGBasePROM1
Genetic variants : HAPMAPPROM1
1000_GenomesPROM1 
ICGC programENSG00000007062 
CONAN: Copy Number AnalysisPROM1 
Somatic Mutations in Cancer : COSMICPROM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
DECIPHER (Syndromes)4:15969849-16085594
Mutations and Diseases : HGMDPROM1
OMIM603786    604365    608051    612095    612657   
MedgenPROM1
GENETestsPROM1
Disease Genetic AssociationPROM1
Huge Navigator PROM1 [HugePedia]  PROM1 [HugeCancerGEM]
Genomic VariantsPROM1  PROM1 [DGVbeta]
Exome VariantPROM1
dbVarPROM1
ClinVarPROM1
snp3D : Map Gene to Disease8842
General knowledge
Homologs : HomoloGenePROM1
Homology/Alignments : Family Browser (UCSC)PROM1
Phylogenetic Trees/Animal Genes : TreeFamPROM1
Chemical/Protein Interactions : CTD8842
Chemical/Pharm GKB GenePA33807
Clinical trialPROM1
Cancer Resource (Charite)ENSG00000007062
Other databases
Probes
Litterature
PubMed319 Pubmed reference(s) in Entrez
CoreMinePROM1
GoPubMedPROM1
iHOPPROM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:50:47 CET 2014

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