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PRORSD1P (prolyl-tRNA synthetase associated domain containing 1, pseudogene)

Identity

Alias_namesNCRNA00117
PRDXDD1P
non-protein coding RNA 117
PrdX deacylase domain containing 1, pseudogene
Alias_symbol (synonym)Prdxdd1
Ybakd1
Other alias
HGNC (Hugo) PRORSD1P
LocusID (NCBI) 344405
Atlas_Id 78193
Location 2p16.1  [Link to chromosome band 2p16]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRORSD1P   34379
Cards
Entrez_Gene (NCBI)PRORSD1P  344405  prolyl-tRNA synthetase associated domain containing 1, pseudogene
AliasesNCRNA00117; PRDXDD1P; Prdxdd1; Ybakd1
GeneCards (Weizmann)PRORSD1P
Ensembl hg19 (Hinxton)ENSG00000162997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162997 [Gene_View]  - [Contig_View]  PRORSD1P [Vega]
ICGC DataPortalENSG00000162997
TCGA cBioPortalPRORSD1P
AceView (NCBI)PRORSD1P
Genatlas (Paris)PRORSD1P
WikiGenes344405
SOURCE (Princeton)PRORSD1P
Genetics Home Reference (NIH)PRORSD1P
Genomic and cartography
GoldenPath hg38 (UCSC)PRORSD1P  -  
GoldenPath hg19 (UCSC)PRORSD1P  -  
EnsemblPRORSD1P - [CytoView hg19]  PRORSD1P - [CytoView hg38]
Mapping of homologs : NCBIPRORSD1P [Mapview hg19]  PRORSD1P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU607366
RefSeq transcript (Entrez)NM_001080459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRORSD1P
Cluster EST : UnigeneHs.445292 [ NCBI ]
CGAP (NCI)Hs.445292
Alternative Splicing GalleryENSG00000162997
Gene ExpressionPRORSD1P [ NCBI-GEO ]   PRORSD1P [ EBI - ARRAY_EXPRESS ]   PRORSD1P [ SEEK ]   PRORSD1P [ MEM ]
Gene Expression Viewer (FireBrowse)PRORSD1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344405
GTEX Portal (Tissue expression)PRORSD1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEY8
Splice isoforms : SwissVarA6NEY8
PhosPhoSitePlusA6NEY8
Domains : Interpro (EBI)YbaK/aa-tRNA-synth-assoc-dom   
Domain families : Pfam (Sanger)tRNA_edit (PF04073)   
Domain families : Pfam (NCBI)pfam04073   
Conserved Domain (NCBI)PRORSD1P
DMDM Disease mutations344405
Blocks (Seattle)PRORSD1P
SuperfamilyA6NEY8
Human Protein AtlasENSG00000162997
Peptide AtlasA6NEY8
IPIIPI00106145   
Protein Interaction databases
DIP (DOE-UCLA)A6NEY8
IntAct (EBI)A6NEY8
FunCoupENSG00000162997
BioGRIDPRORSD1P
STRING (EMBL)PRORSD1P
ZODIACPRORSD1P
Ontologies - Pathways
QuickGOA6NEY8
Ontology : AmiGOaminoacyl-tRNA editing activity  regulation of translational fidelity  
Ontology : EGO-EBIaminoacyl-tRNA editing activity  regulation of translational fidelity  
NDEx NetworkPRORSD1P
Atlas of Cancer Signalling NetworkPRORSD1P
Wikipedia pathwaysPRORSD1P
Orthology - Evolution
OrthoDB344405
GeneTree (enSembl)ENSG00000162997
Phylogenetic Trees/Animal Genes : TreeFamPRORSD1P
HOVERGENA6NEY8
HOGENOMA6NEY8
Homologs : HomoloGenePRORSD1P
Homology/Alignments : Family Browser (UCSC)PRORSD1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRORSD1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRORSD1P
dbVarPRORSD1P
ClinVarPRORSD1P
1000_GenomesPRORSD1P 
Exome Variant ServerPRORSD1P
ExAC (Exome Aggregation Consortium)PRORSD1P (select the gene name)
Genetic variants : HAPMAP344405
Genomic Variants (DGV)PRORSD1P [DGVbeta]
DECIPHERPRORSD1P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRORSD1P 
Mutations
ICGC Data PortalPRORSD1P 
TCGA Data PortalPRORSD1P 
Broad Tumor PortalPRORSD1P
OASIS PortalPRORSD1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRORSD1P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRORSD1P
DgiDB (Drug Gene Interaction Database)PRORSD1P
DoCM (Curated mutations)PRORSD1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRORSD1P (select a term)
intoGenPRORSD1P
Cancer3DPRORSD1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRORSD1P
Genetic Testing Registry PRORSD1P
NextProtA6NEY8 [Medical]
TSGene344405
GENETestsPRORSD1P
Target ValidationPRORSD1P
Huge Navigator PRORSD1P [HugePedia]
snp3D : Map Gene to Disease344405
BioCentury BCIQPRORSD1P
ClinGenPRORSD1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344405
Chemical/Pharm GKB GenePA164723675
Clinical trialPRORSD1P
Miscellaneous
canSAR (ICR)PRORSD1P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRORSD1P
EVEXPRORSD1P
GoPubMedPRORSD1P
iHOPPRORSD1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:25 CEST 2017

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