Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRORY (proline rich, Y-linked)

Identity

Alias_namesCYorf17
chromosome Y open reading frame 17
Other alias
HGNC (Hugo) PRORY
LocusID (NCBI) 100533178
Atlas_Id 72242
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 23544860 and ends at 23548246 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRORY   38732
Cards
Entrez_Gene (NCBI)PRORY  100533178  proline rich, Y-linked
AliasesCYorf17
GeneCards (Weizmann)PRORY
Ensembl hg19 (Hinxton)ENSG00000183146 [Gene_View]  chrY:23544860-23548246 [Contig_View]  PRORY [Vega]
Ensembl hg38 (Hinxton)ENSG00000183146 [Gene_View]  chrY:23544860-23548246 [Contig_View]  PRORY [Vega]
ICGC DataPortalENSG00000183146
TCGA cBioPortalPRORY
AceView (NCBI)PRORY
Genatlas (Paris)PRORY
WikiGenes100533178
SOURCE (Princeton)PRORY
Genetics Home Reference (NIH)PRORY
Genomic and cartography
GoldenPath hg19 (UCSC)PRORY  -     chrY:23544860-23548246 -  Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRORY  -     Yq11.223   [Description]    (hg38-Dec_2013)
EnsemblPRORY - Yq11.223 [CytoView hg19]  PRORY - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIPRORY [Mapview hg19]  PRORY [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026367
RefSeq transcript (Entrez)NM_001282471
RefSeq genomic (Entrez)NC_000024 NT_011875
Consensus coding sequences : CCDS (NCBI)PRORY
Alternative Splicing GalleryENSG00000183146
Gene ExpressionPRORY [ NCBI-GEO ]   PRORY [ EBI - ARRAY_EXPRESS ]   PRORY [ SEEK ]   PRORY [ MEM ]
Gene Expression Viewer (FireBrowse)PRORY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100533178
GTEX Portal (Tissue expression)PRORY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H606   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H606  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H606
Splice isoforms : SwissVarQ9H606
PhosPhoSitePlusQ9H606
Domains : Interpro (EBI)DUF1725   
Domain families : Pfam (Sanger)DUF1725 (PF08333)   
Domain families : Pfam (NCBI)pfam08333   
Conserved Domain (NCBI)PRORY
DMDM Disease mutations100533178
Blocks (Seattle)PRORY
SuperfamilyQ9H606
Human Protein AtlasENSG00000183146
Peptide AtlasQ9H606
IPIIPI00017926   
Protein Interaction databases
DIP (DOE-UCLA)Q9H606
IntAct (EBI)Q9H606
FunCoupENSG00000183146
BioGRIDPRORY
STRING (EMBL)PRORY
ZODIACPRORY
Ontologies - Pathways
QuickGOQ9H606
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRORY
Atlas of Cancer Signalling NetworkPRORY
Wikipedia pathwaysPRORY
Orthology - Evolution
OrthoDB100533178
GeneTree (enSembl)ENSG00000183146
Phylogenetic Trees/Animal Genes : TreeFamPRORY
HOVERGENQ9H606
HOGENOMQ9H606
Homologs : HomoloGenePRORY
Homology/Alignments : Family Browser (UCSC)PRORY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRORY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRORY
dbVarPRORY
ClinVarPRORY
1000_GenomesPRORY 
Exome Variant ServerPRORY
ExAC (Exome Aggregation Consortium)PRORY (select the gene name)
Genetic variants : HAPMAP100533178
Genomic Variants (DGV)PRORY [DGVbeta]
DECIPHER (Syndromes)Y:23544860-23548246  ENSG00000183146
CONAN: Copy Number AnalysisPRORY 
Mutations
ICGC Data PortalPRORY 
TCGA Data PortalPRORY 
Broad Tumor PortalPRORY
OASIS PortalPRORY [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRORY
BioMutasearch PRORY
DgiDB (Drug Gene Interaction Database)PRORY
DoCM (Curated mutations)PRORY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRORY (select a term)
intoGenPRORY
Cancer3DPRORY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRORY
Genetic Testing Registry PRORY
NextProtQ9H606 [Medical]
TSGene100533178
GENETestsPRORY
Huge Navigator PRORY [HugePedia]
snp3D : Map Gene to Disease100533178
BioCentury BCIQPRORY
ClinGenPRORY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533178
Clinical trialPRORY
Miscellaneous
canSAR (ICR)PRORY (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRORY
EVEXPRORY
GoPubMedPRORY
iHOPPRORY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:39:44 CET 2017

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