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PROSER1 (proline and serine rich 1)

Identity

Alias_namesC13orf23
chromosome 13 open reading frame 23
Alias_symbol (synonym)bA50D16.2
FLJ12661
Other alias
HGNC (Hugo) PROSER1
LocusID (NCBI) 80209
Atlas_Id 72244
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 39009865 and ends at 39038076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NHLRC3 (13q13.3) / PROSER1 (13q13.3)PROSER1 (13q13.3) / FMNL2 (2q23.3)PROSER1 (13q13.3) / TCOF1 (5q32)
SYTL3 (6q25.3) / PROSER1 (13q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PROSER1   20291
Cards
Entrez_Gene (NCBI)PROSER1  80209  proline and serine rich 1
AliasesC13orf23
GeneCards (Weizmann)PROSER1
Ensembl hg19 (Hinxton)ENSG00000120685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120685 [Gene_View]  chr13:39009865-39038076 [Contig_View]  PROSER1 [Vega]
ICGC DataPortalENSG00000120685
TCGA cBioPortalPROSER1
AceView (NCBI)PROSER1
Genatlas (Paris)PROSER1
WikiGenes80209
SOURCE (Princeton)PROSER1
Genetics Home Reference (NIH)PROSER1
Genomic and cartography
GoldenPath hg38 (UCSC)PROSER1  -     chr13:39009865-39038076 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PROSER1  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblPROSER1 - 13q13.3 [CytoView hg19]  PROSER1 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBIPROSER1 [Mapview hg19]  PROSER1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA598728 AB107354 AK022723 AK024308 AK074360
RefSeq transcript (Entrez)NM_025138 NM_170719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PROSER1
Cluster EST : UnigeneHs.318526 [ NCBI ]
CGAP (NCI)Hs.318526
Alternative Splicing GalleryENSG00000120685
Gene ExpressionPROSER1 [ NCBI-GEO ]   PROSER1 [ EBI - ARRAY_EXPRESS ]   PROSER1 [ SEEK ]   PROSER1 [ MEM ]
Gene Expression Viewer (FireBrowse)PROSER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80209
GTEX Portal (Tissue expression)PROSER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XN7
Splice isoforms : SwissVarQ86XN7
PhosPhoSitePlusQ86XN7
Domains : Interpro (EBI)DUF4476   
Domain families : Pfam (Sanger)DUF4476 (PF14771)   
Domain families : Pfam (NCBI)pfam14771   
Conserved Domain (NCBI)PROSER1
DMDM Disease mutations80209
Blocks (Seattle)PROSER1
SuperfamilyQ86XN7
Human Protein AtlasENSG00000120685
Peptide AtlasQ86XN7
HPRD12616
IPIIPI00329260   IPI00418365   IPI00552995   
Protein Interaction databases
DIP (DOE-UCLA)Q86XN7
IntAct (EBI)Q86XN7
FunCoupENSG00000120685
BioGRIDPROSER1
STRING (EMBL)PROSER1
ZODIACPROSER1
Ontologies - Pathways
QuickGOQ86XN7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPROSER1
Atlas of Cancer Signalling NetworkPROSER1
Wikipedia pathwaysPROSER1
Orthology - Evolution
OrthoDB80209
GeneTree (enSembl)ENSG00000120685
Phylogenetic Trees/Animal Genes : TreeFamPROSER1
HOVERGENQ86XN7
HOGENOMQ86XN7
Homologs : HomoloGenePROSER1
Homology/Alignments : Family Browser (UCSC)PROSER1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPROSER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PROSER1
dbVarPROSER1
ClinVarPROSER1
1000_GenomesPROSER1 
Exome Variant ServerPROSER1
ExAC (Exome Aggregation Consortium)PROSER1 (select the gene name)
Genetic variants : HAPMAP80209
Genomic Variants (DGV)PROSER1 [DGVbeta]
DECIPHERPROSER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPROSER1 
Mutations
ICGC Data PortalPROSER1 
TCGA Data PortalPROSER1 
Broad Tumor PortalPROSER1
OASIS PortalPROSER1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPROSER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PROSER1
DgiDB (Drug Gene Interaction Database)PROSER1
DoCM (Curated mutations)PROSER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PROSER1 (select a term)
intoGenPROSER1
Cancer3DPROSER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPROSER1
Genetic Testing Registry PROSER1
NextProtQ86XN7 [Medical]
TSGene80209
GENETestsPROSER1
Target ValidationPROSER1
Huge Navigator PROSER1 [HugePedia]
snp3D : Map Gene to Disease80209
BioCentury BCIQPROSER1
ClinGenPROSER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80209
Chemical/Pharm GKB GenePA134912550
Clinical trialPROSER1
Miscellaneous
canSAR (ICR)PROSER1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePROSER1
EVEXPROSER1
GoPubMedPROSER1
iHOPPROSER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:36:35 CEST 2017

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