Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PROSER2 (proline and serine rich 2)

Identity

Alias_namesC10orf47
chromosome 10 open reading frame 47
proline and serine-rich protein 2
Alias_symbol (synonym)MGC35403
Other alias
HGNC (Hugo) PROSER2
LocusID (NCBI) 254427
Atlas_Id 72245
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11823398 and ends at 11872277 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PROSER2   23728
Cards
Entrez_Gene (NCBI)PROSER2  254427  proline and serine rich 2
AliasesC10orf47
GeneCards (Weizmann)PROSER2
Ensembl hg19 (Hinxton)ENSG00000148426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148426 [Gene_View]  chr10:11823398-11872277 [Contig_View]  PROSER2 [Vega]
ICGC DataPortalENSG00000148426
TCGA cBioPortalPROSER2
AceView (NCBI)PROSER2
Genatlas (Paris)PROSER2
WikiGenes254427
SOURCE (Princeton)PROSER2
Genetics Home Reference (NIH)PROSER2
Genomic and cartography
GoldenPath hg38 (UCSC)PROSER2  -     chr10:11823398-11872277 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PROSER2  -     10p14   [Description]    (hg19-Feb_2009)
EnsemblPROSER2 - 10p14 [CytoView hg19]  PROSER2 - 10p14 [CytoView hg38]
Mapping of homologs : NCBIPROSER2 [Mapview hg19]  PROSER2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007547 BC017269 BC029134 BC040040 BC048800
RefSeq transcript (Entrez)NM_153256
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PROSER2
Cluster EST : UnigeneHs.435775 [ NCBI ]
CGAP (NCI)Hs.435775
Alternative Splicing GalleryENSG00000148426
Gene ExpressionPROSER2 [ NCBI-GEO ]   PROSER2 [ EBI - ARRAY_EXPRESS ]   PROSER2 [ SEEK ]   PROSER2 [ MEM ]
Gene Expression Viewer (FireBrowse)PROSER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254427
GTEX Portal (Tissue expression)PROSER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WR7
Splice isoforms : SwissVarQ86WR7
PhosPhoSitePlusQ86WR7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PROSER2
DMDM Disease mutations254427
Blocks (Seattle)PROSER2
SuperfamilyQ86WR7
Human Protein AtlasENSG00000148426
Peptide AtlasQ86WR7
HPRD10697
IPIIPI00329115   IPI00873200   IPI00647239   IPI00641934   
Protein Interaction databases
DIP (DOE-UCLA)Q86WR7
IntAct (EBI)Q86WR7
FunCoupENSG00000148426
BioGRIDPROSER2
STRING (EMBL)PROSER2
ZODIACPROSER2
Ontologies - Pathways
QuickGOQ86WR7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPROSER2
Atlas of Cancer Signalling NetworkPROSER2
Wikipedia pathwaysPROSER2
Orthology - Evolution
OrthoDB254427
GeneTree (enSembl)ENSG00000148426
Phylogenetic Trees/Animal Genes : TreeFamPROSER2
HOVERGENQ86WR7
HOGENOMQ86WR7
Homologs : HomoloGenePROSER2
Homology/Alignments : Family Browser (UCSC)PROSER2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPROSER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PROSER2
dbVarPROSER2
ClinVarPROSER2
1000_GenomesPROSER2 
Exome Variant ServerPROSER2
ExAC (Exome Aggregation Consortium)PROSER2 (select the gene name)
Genetic variants : HAPMAP254427
Genomic Variants (DGV)PROSER2 [DGVbeta]
DECIPHERPROSER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPROSER2 
Mutations
ICGC Data PortalPROSER2 
TCGA Data PortalPROSER2 
Broad Tumor PortalPROSER2
OASIS PortalPROSER2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPROSER2
BioMutasearch PROSER2
DgiDB (Drug Gene Interaction Database)PROSER2
DoCM (Curated mutations)PROSER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PROSER2 (select a term)
intoGenPROSER2
Cancer3DPROSER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPROSER2
Genetic Testing Registry PROSER2
NextProtQ86WR7 [Medical]
TSGene254427
GENETestsPROSER2
Target ValidationPROSER2
Huge Navigator PROSER2 [HugePedia]
snp3D : Map Gene to Disease254427
BioCentury BCIQPROSER2
ClinGenPROSER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254427
Chemical/Pharm GKB GenePA134910296
Clinical trialPROSER2
Miscellaneous
canSAR (ICR)PROSER2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePROSER2
EVEXPROSER2
GoPubMedPROSER2
iHOPPROSER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:37:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.