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PRPF31 (pre-mRNA processing factor 31)

Identity

Other namesNY-BR-99
PRP31
RP11
SNRNP61
HGNC (Hugo) PRPF31
LocusID (NCBI) 26121
Location 19q13.42
Location_base_pair Starts at 54618790 and ends at 54635150 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRPF31   15446
Cards
Entrez_Gene (NCBI)PRPF31  26121  pre-mRNA processing factor 31
GeneCards (Weizmann)PRPF31
Ensembl (Hinxton)ENSG00000105618 [Gene_View]  chr19:54618790-54635150 [Contig_View]  PRPF31 [Vega]
ICGC DataPortalENSG00000105618
cBioPortalPRPF31
AceView (NCBI)PRPF31
Genatlas (Paris)PRPF31
WikiGenes26121
SOURCE (Princeton)NM_015629
Genomic and cartography
GoldenPath (UCSC)PRPF31  -  19q13.42   chr19:54618790-54635150 +  19q13.42   [Description]    (hg19-Feb_2009)
EnsemblPRPF31 - 19q13.42 [CytoView]
Mapping of homologs : NCBIPRPF31 [Mapview]
OMIM600138   606419   
Gene and transcription
Genbank (Entrez)AB593024 AB593025 AF308303 AK098547 AK301709
RefSeq transcript (Entrez)NM_015629
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_009759 NT_011109 NT_187693 NW_001838498 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061 NW_004929415
Consensus coding sequences : CCDS (NCBI)PRPF31
Cluster EST : UnigeneHs.515598 [ NCBI ]
CGAP (NCI)Hs.515598
Alternative Splicing : Fast-db (Paris)GSHG0015176
Alternative Splicing GalleryENSG00000105618
Gene ExpressionPRPF31 [ NCBI-GEO ]     PRPF31 [ SEEK ]   PRPF31 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWY3 (Uniprot)
NextProtQ8WWY3  [Medical]
With graphics : InterProQ8WWY3
Splice isoforms : SwissVarQ8WWY3 (Swissvar)
Domaine pattern : Prosite (Expaxy)NOP (PS51358)   
Domains : Interpro (EBI)Nop_dom [organisation]   NOSIC [organisation]   Prp31 [organisation]   Prp31_C [organisation]  
Related proteins : CluSTrQ8WWY3
Domain families : Pfam (Sanger)Nop (PF01798)    NOSIC (PF08060)    Prp31_C (PF09785)   
Domain families : Pfam (NCBI)pfam01798    pfam08060    pfam09785   
Domain families : Smart (EMBL)NOSIC (SM00931)  
DMDM Disease mutations26121
Blocks (Seattle)Q8WWY3
PDB (SRS)2OZB    3SIU    3SIV   
PDB (PDBSum)2OZB    3SIU    3SIV   
PDB (IMB)2OZB    3SIU    3SIV   
PDB (RSDB)2OZB    3SIU    3SIV   
Human Protein AtlasENSG00000105618 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8WWY3
HPRD05917
IPIIPI00292000   IPI00167198   IPI00738596   IPI00657721   IPI00657783   IPI00657750   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWY3
IntAct (EBI)Q8WWY3
FunCoupENSG00000105618
BioGRIDPRPF31
InParanoidQ8WWY3
Interologous Interaction database Q8WWY3
IntegromeDBPRPF31
STRING (EMBL)PRPF31
Ontologies - Pathways
Ontology : AmiGOspliceosomal tri-snRNP complex assembly  spliceosomal tri-snRNP complex assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  U2-type spliceosomal complex  U4 snRNP  U4atac snRNP  Cajal body  nuclear speck  ribonucleoprotein complex binding  poly(A) RNA binding  U4/U6 x U5 tri-snRNP complex  snRNP binding  MLL1 complex  
Ontology : EGO-EBIspliceosomal tri-snRNP complex assembly  spliceosomal tri-snRNP complex assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  U2-type spliceosomal complex  U4 snRNP  U4atac snRNP  Cajal body  nuclear speck  ribonucleoprotein complex binding  poly(A) RNA binding  U4/U6 x U5 tri-snRNP complex  snRNP binding  MLL1 complex  
Pathways : KEGGSpliceosome   
Protein Interaction DatabasePRPF31
Wikipedia pathwaysPRPF31
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PRPF31
snp3D : Map Gene to Disease26121
SNP (GeneSNP Utah)PRPF31
SNP : HGBasePRPF31
Genetic variants : HAPMAPPRPF31
Exome VariantPRPF31
1000_GenomesPRPF31 
ICGC programENSG00000105618 
Somatic Mutations in Cancer : COSMICPRPF31 
CONAN: Copy Number AnalysisPRPF31 
Mutations and Diseases : HGMDPRPF31
Mutations and Diseases : intOGenPRPF31
Genomic VariantsPRPF31  PRPF31 [DGVbeta]
dbVarPRPF31
ClinVarPRPF31
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600138    606419   
MedgenPRPF31
GENETestsPRPF31
Disease Genetic AssociationPRPF31
Huge Navigator PRPF31 [HugePedia]  PRPF31 [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePRPF31
Homology/Alignments : Family Browser (UCSC)PRPF31
Phylogenetic Trees/Animal Genes : TreeFamPRPF31
Chemical/Protein Interactions : CTD26121
Chemical/Pharm GKB GenePA33814
Clinical trialPRPF31
Cancer Resource (Charite)ENSG00000105618
Other databases
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
CoreMinePRPF31
iHOPPRPF31
OncoSearchPRPF31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:12:51 CEST 2014

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