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PRPF31 (pre-mRNA processing factor 31)

Identity

Alias_namesRP11
PRP31 pre-mRNA processing factor 31 homolog (yeast)
PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)
Alias_symbol (synonym)NY-BR-99
PRP31
hPrp31
SNRNP61
HGNC (Hugo) PRPF31
LocusID (NCBI) 26121
Atlas_Id 46070
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54618790 and ends at 54635150 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRPF31   15446
Cards
Entrez_Gene (NCBI)PRPF31  26121  pre-mRNA processing factor 31
AliasesNY-BR-99; PRP31; RP11; SNRNP61
GeneCards (Weizmann)PRPF31
Ensembl hg19 (Hinxton)ENSG00000105618 [Gene_View]  chr19:54618790-54635150 [Contig_View]  PRPF31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105618 [Gene_View]  chr19:54618790-54635150 [Contig_View]  PRPF31 [Vega]
ICGC DataPortalENSG00000105618
TCGA cBioPortalPRPF31
AceView (NCBI)PRPF31
Genatlas (Paris)PRPF31
WikiGenes26121
SOURCE (Princeton)PRPF31
Genetics Home Reference (NIH)PRPF31
Genomic and cartography
GoldenPath hg19 (UCSC)PRPF31  -     chr19:54618790-54635150 +  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRPF31  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblPRPF31 - 19q13.42 [CytoView hg19]  PRPF31 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIPRPF31 [Mapview hg19]  PRPF31 [Mapview hg38]
OMIM600138   606419   
Gene and transcription
Genbank (Entrez)AB593024 AB593025 AF308303 AK098547 AK301709
RefSeq transcript (Entrez)NM_015629
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_009759 NT_011109 NT_187693 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061 NW_004929415
Consensus coding sequences : CCDS (NCBI)PRPF31
Cluster EST : UnigeneHs.515598 [ NCBI ]
CGAP (NCI)Hs.515598
Alternative Splicing GalleryENSG00000105618
Gene ExpressionPRPF31 [ NCBI-GEO ]   PRPF31 [ EBI - ARRAY_EXPRESS ]   PRPF31 [ SEEK ]   PRPF31 [ MEM ]
Gene Expression Viewer (FireBrowse)PRPF31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26121
GTEX Portal (Tissue expression)PRPF31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWY3
Splice isoforms : SwissVarQ8WWY3
PhosPhoSitePlusQ8WWY3
Domaine pattern : Prosite (Expaxy)NOP (PS51358)   
Domains : Interpro (EBI)Nop_dom    NOSIC    Prp31    Prp31_C   
Domain families : Pfam (Sanger)Nop (PF01798)    Prp31_C (PF09785)   
Domain families : Pfam (NCBI)pfam01798    pfam09785   
Domain families : Smart (EMBL)NOSIC (SM00931)  
Conserved Domain (NCBI)PRPF31
DMDM Disease mutations26121
Blocks (Seattle)PRPF31
PDB (SRS)2OZB    3SIU    3SIV   
PDB (PDBSum)2OZB    3SIU    3SIV   
PDB (IMB)2OZB    3SIU    3SIV   
PDB (RSDB)2OZB    3SIU    3SIV   
Structural Biology KnowledgeBase2OZB    3SIU    3SIV   
SCOP (Structural Classification of Proteins)2OZB    3SIU    3SIV   
CATH (Classification of proteins structures)2OZB    3SIU    3SIV   
SuperfamilyQ8WWY3
Human Protein AtlasENSG00000105618
Peptide AtlasQ8WWY3
HPRD05917
IPIIPI00292000   IPI00167198   IPI00738596   IPI00657721   IPI00657783   IPI00657750   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWY3
IntAct (EBI)Q8WWY3
FunCoupENSG00000105618
BioGRIDPRPF31
STRING (EMBL)PRPF31
ZODIACPRPF31
Ontologies - Pathways
QuickGOQ8WWY3
Ontology : AmiGOspliceosomal tri-snRNP complex assembly  spliceosomal tri-snRNP complex assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  U2-type spliceosomal complex  U4 snRNP  U4atac snRNP  Cajal body  nuclear speck  U4 snRNA binding  U4atac snRNA binding  ribonucleoprotein complex binding  poly(A) RNA binding  U4/U6 x U5 tri-snRNP complex  snoRNA localization  snRNP binding  precatalytic spliceosome  ribonucleoprotein complex localization  MLL1 complex  
Ontology : EGO-EBIspliceosomal tri-snRNP complex assembly  spliceosomal tri-snRNP complex assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  U2-type spliceosomal complex  U4 snRNP  U4atac snRNP  Cajal body  nuclear speck  U4 snRNA binding  U4atac snRNA binding  ribonucleoprotein complex binding  poly(A) RNA binding  U4/U6 x U5 tri-snRNP complex  snoRNA localization  snRNP binding  precatalytic spliceosome  ribonucleoprotein complex localization  MLL1 complex  
Pathways : KEGGSpliceosome   
NDEx NetworkPRPF31
Atlas of Cancer Signalling NetworkPRPF31
Wikipedia pathwaysPRPF31
Orthology - Evolution
OrthoDB26121
GeneTree (enSembl)ENSG00000105618
Phylogenetic Trees/Animal Genes : TreeFamPRPF31
HOVERGENQ8WWY3
HOGENOMQ8WWY3
Homologs : HomoloGenePRPF31
Homology/Alignments : Family Browser (UCSC)PRPF31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRPF31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRPF31
dbVarPRPF31
ClinVarPRPF31
1000_GenomesPRPF31 
Exome Variant ServerPRPF31
ExAC (Exome Aggregation Consortium)PRPF31 (select the gene name)
Genetic variants : HAPMAP26121
Genomic Variants (DGV)PRPF31 [DGVbeta]
DECIPHER (Syndromes)19:54618790-54635150  ENSG00000105618
CONAN: Copy Number AnalysisPRPF31 
Mutations
ICGC Data PortalPRPF31 
TCGA Data PortalPRPF31 
Broad Tumor PortalPRPF31
OASIS PortalPRPF31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRPF31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRPF31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch PRPF31
DgiDB (Drug Gene Interaction Database)PRPF31
DoCM (Curated mutations)PRPF31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRPF31 (select a term)
intoGenPRPF31
Cancer3DPRPF31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600138    606419   
Orphanet659   
MedgenPRPF31
Genetic Testing Registry PRPF31
NextProtQ8WWY3 [Medical]
TSGene26121
GENETestsPRPF31
Huge Navigator PRPF31 [HugePedia]
snp3D : Map Gene to Disease26121
BioCentury BCIQPRPF31
ClinGenPRPF31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26121
Chemical/Pharm GKB GenePA33814
Clinical trialPRPF31
Miscellaneous
canSAR (ICR)PRPF31 (select the gene name)
Probes
Litterature
PubMed98 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRPF31
EVEXPRPF31
GoPubMedPRPF31
iHOPPRPF31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:48:38 CET 2016

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