PRPF31 (pre-mRNA processing factor 31)

2007-02-01  

Identity

HGNC
LOCATION
19q13.42
LOCUSID
ALIAS
NY-BR-99,PRP31,RP11,SNRNP61

Other Information

Locus ID:

NCBI: 26121
MIM: 606419
HGNC: 15446
Ensembl: ENSG00000105618

Variants:

dbSNP: 26121
ClinVar: 26121
TCGA: ENSG00000105618
COSMIC: PRPF31

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000105618ENST00000321030Q8WWY3
ENSG00000105618ENST00000391755E7EVX8
ENSG00000105618ENST00000419967Q8WWY3
ENSG00000105618ENST00000445124E7ESX0
ENSG00000105618ENST00000445811E7EN72
ENSG00000105618ENST00000447810E7EU94

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Spliceosome, U4/U6.U5 tri-snRNPKEGGhsa_M00354
Spliceosome, U4/U6.U5 tri-snRNPKEGGM00354
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163

Protein levels (Protein atlas)

Not detected
Low
Medium
High

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA443890Diabetes Mellitus, Type 2DiseaseClinicalAnnotationassociatedPD29650774
PA450395metforminChemicalClinicalAnnotationassociatedPD29650774

References

Pubmed IDYearTitleCitations
385423642024A Precision Therapy Approach for Retinitis Pigmentosa 11 Using Splice-Switching Antisense Oligonucleotides to Restore the Open Reading Frame of PRPF31.0
385423642024A Precision Therapy Approach for Retinitis Pigmentosa 11 Using Splice-Switching Antisense Oligonucleotides to Restore the Open Reading Frame of PRPF31.0
338778862023Long Noncoding RNA RP11-89K21.1 Interacts with miR-146a/b-5p to Promote Proliferation and Gefitinib Resistance Through Regulating RHPN2 and RhoA/ROCK Pathway in Lung Adenocarcinoma.1
361642532023Disease progression of retinitis pigmentosa caused by PRPF31 variants in a Nordic population: a retrospective study with up to 36 years follow-up.3
381394382023Pathogenic Variants in USH1G/SANS Alter Protein Interaction with Pre-RNA Processing Factors PRPF6 and PRPF31 of the Spliceosome.0
338778862023Long Noncoding RNA RP11-89K21.1 Interacts with miR-146a/b-5p to Promote Proliferation and Gefitinib Resistance Through Regulating RHPN2 and RhoA/ROCK Pathway in Lung Adenocarcinoma.1
361642532023Disease progression of retinitis pigmentosa caused by PRPF31 variants in a Nordic population: a retrospective study with up to 36 years follow-up.3
381394382023Pathogenic Variants in USH1G/SANS Alter Protein Interaction with Pre-RNA Processing Factors PRPF6 and PRPF31 of the Spliceosome.0
352975552022Activation of autophagy reverses progressive and deleterious protein aggregation in PRPF31 patient-induced pluripotent stem cell-derived retinal pigment epithelium cells.8
358665952022LncRNA RP11‑805J14.5 functions as a ceRNA to regulate CCND2 by sponging miR‑34b‑3p and miR‑139‑5p in lung adenocarcinoma.5
360888042022PRPF31 interacts with PRPH2 confirmed by co-immunoprecipitation and co-localization.1
363174692022Comprehensive analysis of the PRPF31 gene in retinitis pigmentosa patients: Four novel Alu-mediated copy number variations at the PRPF31 locus.1
352975552022Activation of autophagy reverses progressive and deleterious protein aggregation in PRPF31 patient-induced pluripotent stem cell-derived retinal pigment epithelium cells.8
358665952022LncRNA RP11‑805J14.5 functions as a ceRNA to regulate CCND2 by sponging miR‑34b‑3p and miR‑139‑5p in lung adenocarcinoma.5
360888042022PRPF31 interacts with PRPH2 confirmed by co-immunoprecipitation and co-localization.1

Citation

Dessen P

PRPF31 (pre-mRNA processing factor 31)

Atlas Genet Cytogenet Oncol Haematol. 2007-02-01

Online version: http://atlasgeneticsoncology.org/gene/46070/prpf31