PRPF39 (pre-mRNA processing factor 39)

2014-11-01  

Identity

HGNC
PRPF39
LOCATION
14q21.2
LOCUSID
55015
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 55015
MIM: 614907
HGNC: 20314
Ensembl: ENSG00000185246

Variants:

dbSNP: 55015
ClinVar: 55015
TCGA: ENSG00000185246
COSMIC: PRPF39

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000185246ENST00000355765Q86UA1
ENSG00000185246ENST00000424478F8WB90
ENSG00000185246ENST00000553605G3V5M7
ENSG00000185246ENST00000554081H0YJR1
ENSG00000185246ENST00000554429F8WB90
ENSG00000185246ENST00000554439F8WB90
ENSG00000185246ENST00000557477H0YJY9

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
227737332012Functional consequences of PRPF39 on distant genes and cisplatin sensitivity.3
309497122019Increased versatility despite reduced molecular complexity: evolution, structure and function of metazoan splicing factor PRPF39.0

Citation

Dessen P

PRPF39 (pre-mRNA processing factor 39)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/72252/prpf39