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PRR11 (proline rich 11)

Identity

Alias_symbol (synonym)FLJ11029
Other alias-
HGNC (Hugo) PRR11
LocusID (NCBI) 55771
Atlas_Id 53546
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 59155499 and ends at 59206709 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCAF7 (17q23.3) / PRR11 (17q22)PRR11 (17q22) / SMG8 (17q22)PRR11 (17q22) / SNRPE (1q32.1)
RARA (17q21.2) / PRR11 (17q22)RARA 17q21.2 / PRR11 17q22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR11   25619
Cards
Entrez_Gene (NCBI)PRR11  55771  proline rich 11
Aliases
GeneCards (Weizmann)PRR11
Ensembl hg19 (Hinxton)ENSG00000068489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068489 [Gene_View]  chr17:59155499-59206709 [Contig_View]  PRR11 [Vega]
ICGC DataPortalENSG00000068489
TCGA cBioPortalPRR11
AceView (NCBI)PRR11
Genatlas (Paris)PRR11
WikiGenes55771
SOURCE (Princeton)PRR11
Genetics Home Reference (NIH)PRR11
Genomic and cartography
GoldenPath hg38 (UCSC)PRR11  -     chr17:59155499-59206709 +  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR11  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblPRR11 - 17q22 [CytoView hg19]  PRR11 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIPRR11 [Mapview hg19]  PRR11 [Mapview hg38]
OMIM615920   
Gene and transcription
Genbank (Entrez)AK000296 AK001891 AK225377 AK225380 AL711011
RefSeq transcript (Entrez)NM_018304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR11
Cluster EST : UnigeneHs.631750 [ NCBI ]
CGAP (NCI)Hs.631750
Alternative Splicing GalleryENSG00000068489
Gene ExpressionPRR11 [ NCBI-GEO ]   PRR11 [ EBI - ARRAY_EXPRESS ]   PRR11 [ SEEK ]   PRR11 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55771
GTEX Portal (Tissue expression)PRR11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HE9
Splice isoforms : SwissVarQ96HE9
PhosPhoSitePlusQ96HE9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR11
DMDM Disease mutations55771
Blocks (Seattle)PRR11
SuperfamilyQ96HE9
Human Protein AtlasENSG00000068489
Peptide AtlasQ96HE9
HPRD07726
IPIIPI00305822   
Protein Interaction databases
DIP (DOE-UCLA)Q96HE9
IntAct (EBI)Q96HE9
FunCoupENSG00000068489
BioGRIDPRR11
STRING (EMBL)PRR11
ZODIACPRR11
Ontologies - Pathways
QuickGOQ96HE9
Ontology : AmiGOnucleus  cytoplasm  cell cycle arrest  membrane  regulation of cell cycle  
Ontology : EGO-EBInucleus  cytoplasm  cell cycle arrest  membrane  regulation of cell cycle  
NDEx NetworkPRR11
Atlas of Cancer Signalling NetworkPRR11
Wikipedia pathwaysPRR11
Orthology - Evolution
OrthoDB55771
GeneTree (enSembl)ENSG00000068489
Phylogenetic Trees/Animal Genes : TreeFamPRR11
HOVERGENQ96HE9
HOGENOMQ96HE9
Homologs : HomoloGenePRR11
Homology/Alignments : Family Browser (UCSC)PRR11
Gene fusions - Rearrangements
Fusion : MitelmanDCAF7/PRR11 [17q23.3/17q22]  [t(17;17)(q22;q23)]  
Fusion : MitelmanRARA/PRR11 [17q21.2/17q22]  [t(17;17)(q21;q22)]  
Fusion: TCGARARA 17q21.2 PRR11 17q22 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR11
dbVarPRR11
ClinVarPRR11
1000_GenomesPRR11 
Exome Variant ServerPRR11
ExAC (Exome Aggregation Consortium)PRR11 (select the gene name)
Genetic variants : HAPMAP55771
Genomic Variants (DGV)PRR11 [DGVbeta]
DECIPHERPRR11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR11 
Mutations
ICGC Data PortalPRR11 
TCGA Data PortalPRR11 
Broad Tumor PortalPRR11
OASIS PortalPRR11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR11
DgiDB (Drug Gene Interaction Database)PRR11
DoCM (Curated mutations)PRR11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR11 (select a term)
intoGenPRR11
Cancer3DPRR11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615920   
Orphanet
MedgenPRR11
Genetic Testing Registry PRR11
NextProtQ96HE9 [Medical]
TSGene55771
GENETestsPRR11
Huge Navigator PRR11 [HugePedia]
snp3D : Map Gene to Disease55771
BioCentury BCIQPRR11
ClinGenPRR11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55771
Chemical/Pharm GKB GenePA142671131
Clinical trialPRR11
Miscellaneous
canSAR (ICR)PRR11 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR11
EVEXPRR11
GoPubMedPRR11
iHOPPRR11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:33:01 CEST 2017

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