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PRR12 (proline rich 12)

Identity

Alias_namesKIAA1205
KIAA1205
Other alias
HGNC (Hugo) PRR12
LocusID (NCBI) 57479
Atlas_Id 54556
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50094912 and ends at 50129696 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GIPR (19q13.32) / PRR12 (19q13.33)PRR12 (19q13.33) / FLT3LG (19q13.33)PRR12 (19q13.33) / H19 (11p15.5)
PRR12 (19q13.33) / NAA10 (Xq28)PRR12 (19q13.33) / NUMBL (19q13.2)PRR12 (19q13.33) / PRRG2 (19q13.33)
SERPINA1 (14q32.13) / PRR12 (19q13.33)GIPR 19q13.32 / PRR12 19q13.33PRR12 19q13.33 / PRRG2 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR12   29217
Cards
Entrez_Gene (NCBI)PRR12  57479  proline rich 12
AliasesKIAA1205
GeneCards (Weizmann)PRR12
Ensembl hg19 (Hinxton)ENSG00000126464 [Gene_View]  chr19:50094912-50129696 [Contig_View]  PRR12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126464 [Gene_View]  chr19:50094912-50129696 [Contig_View]  PRR12 [Vega]
ICGC DataPortalENSG00000126464
TCGA cBioPortalPRR12
AceView (NCBI)PRR12
Genatlas (Paris)PRR12
WikiGenes57479
SOURCE (Princeton)PRR12
Genetics Home Reference (NIH)PRR12
Genomic and cartography
GoldenPath hg19 (UCSC)PRR12  -     chr19:50094912-50129696 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR12  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblPRR12 - 19q13.33 [CytoView hg19]  PRR12 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIPRR12 [Mapview hg19]  PRR12 [Mapview hg38]
OMIM616633   
Gene and transcription
Genbank (Entrez)AB033031 BC034003 BF805116 BF933932 BM684867
RefSeq transcript (Entrez)NM_020719
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PRR12
Cluster EST : UnigeneHs.590971 [ NCBI ]
CGAP (NCI)Hs.590971
Alternative Splicing GalleryENSG00000126464
Gene ExpressionPRR12 [ NCBI-GEO ]   PRR12 [ EBI - ARRAY_EXPRESS ]   PRR12 [ SEEK ]   PRR12 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57479
GTEX Portal (Tissue expression)PRR12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULL5
Splice isoforms : SwissVarQ9ULL5
PhosPhoSitePlusQ9ULL5
Domains : Interpro (EBI)AT_hook_DNA-bd_motif    DUF4211   
Domain families : Pfam (Sanger)DUF4211 (PF13926)   
Domain families : Pfam (NCBI)pfam13926   
Domain families : Smart (EMBL)AT_hook (SM00384)  
Conserved Domain (NCBI)PRR12
DMDM Disease mutations57479
Blocks (Seattle)PRR12
SuperfamilyQ9ULL5
Human Protein AtlasENSG00000126464
Peptide AtlasQ9ULL5
IPIIPI00855833   IPI00854630   IPI00941785   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULL5
IntAct (EBI)Q9ULL5
FunCoupENSG00000126464
BioGRIDPRR12
STRING (EMBL)PRR12
ZODIACPRR12
Ontologies - Pathways
QuickGOQ9ULL5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR12
Atlas of Cancer Signalling NetworkPRR12
Wikipedia pathwaysPRR12
Orthology - Evolution
OrthoDB57479
GeneTree (enSembl)ENSG00000126464
Phylogenetic Trees/Animal Genes : TreeFamPRR12
HOVERGENQ9ULL5
HOGENOMQ9ULL5
Homologs : HomoloGenePRR12
Homology/Alignments : Family Browser (UCSC)PRR12
Gene fusions - Rearrangements
Fusion : MitelmanGIPR/PRR12 [19q13.32/19q13.33]  [t(19;19)(q13;q13)]  
Fusion : MitelmanPRR12/FLT3LG [19q13.33/19q13.33]  [t(19;19)(q13;q13)]  
Fusion : MitelmanPRR12/PRRG2 [19q13.33/19q13.33]  [t(19;19)(q13;q13)]  
Fusion: TCGAGIPR 19q13.32 PRR12 19q13.33 LUAD
Fusion: TCGAPRR12 19q13.33 PRRG2 19q13.33 BRCA
Fusion Cancer (Beijing)SERPINA1 [14q32.13]  -  PRR12 [19q13.33]  [FUSC002198]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR12
dbVarPRR12
ClinVarPRR12
1000_GenomesPRR12 
Exome Variant ServerPRR12
ExAC (Exome Aggregation Consortium)PRR12 (select the gene name)
Genetic variants : HAPMAP57479
Genomic Variants (DGV)PRR12 [DGVbeta]
DECIPHER (Syndromes)19:50094912-50129696  ENSG00000126464
CONAN: Copy Number AnalysisPRR12 
Mutations
ICGC Data PortalPRR12 
TCGA Data PortalPRR12 
Broad Tumor PortalPRR12
OASIS PortalPRR12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR12
DgiDB (Drug Gene Interaction Database)PRR12
DoCM (Curated mutations)PRR12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR12 (select a term)
intoGenPRR12
Cancer3DPRR12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616633   
Orphanet
MedgenPRR12
Genetic Testing Registry PRR12
NextProtQ9ULL5 [Medical]
TSGene57479
GENETestsPRR12
Huge Navigator PRR12 [HugePedia]
snp3D : Map Gene to Disease57479
BioCentury BCIQPRR12
ClinGenPRR12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57479
Chemical/Pharm GKB GenePA134903328
Clinical trialPRR12
Miscellaneous
canSAR (ICR)PRR12 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR12
EVEXPRR12
GoPubMedPRR12
iHOPPRR12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:09 CET 2017

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