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PRR13 (proline rich 13)

Identity

Alias_symbol (synonym)FLJ23818
DKFZP564J157
Other aliasTXR1
HGNC (Hugo) PRR13
LocusID (NCBI) 54458
Atlas_Id 40318
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53441649 and ends at 53446643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRR13 (12q13.13) / HNRNPA2B1 (7p15.2)PRR13 (12q13.13) / RPL38 (17q25.1)PRR13 (12q13.13) / RPL8 (8q24.3)
PRR13 (12q13.13) / VIM (10p13)WWC3 (Xp22.2) / PRR13 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR13   24528
Cards
Entrez_Gene (NCBI)PRR13  54458  proline rich 13
AliasesTXR1
GeneCards (Weizmann)PRR13
Ensembl hg19 (Hinxton)ENSG00000205352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205352 [Gene_View]  chr12:53441649-53446643 [Contig_View]  PRR13 [Vega]
ICGC DataPortalENSG00000205352
TCGA cBioPortalPRR13
AceView (NCBI)PRR13
Genatlas (Paris)PRR13
WikiGenes54458
SOURCE (Princeton)PRR13
Genetics Home Reference (NIH)PRR13
Genomic and cartography
GoldenPath hg38 (UCSC)PRR13  -     chr12:53441649-53446643 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR13  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblPRR13 - 12q13.13 [CytoView hg19]  PRR13 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIPRR13 [Mapview hg19]  PRR13 [Mapview hg38]
OMIM610459   
Gene and transcription
Genbank (Entrez)AF217517 AK074398 BC001464 BC004512 BC014257
RefSeq transcript (Entrez)NM_001005354 NM_001005355 NM_018457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR13
Cluster EST : UnigeneHs.744894 [ NCBI ]
CGAP (NCI)Hs.744894
Alternative Splicing GalleryENSG00000205352
Gene ExpressionPRR13 [ NCBI-GEO ]   PRR13 [ EBI - ARRAY_EXPRESS ]   PRR13 [ SEEK ]   PRR13 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54458
GTEX Portal (Tissue expression)PRR13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ81
Splice isoforms : SwissVarQ9NZ81
PhosPhoSitePlusQ9NZ81
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR13
DMDM Disease mutations54458
Blocks (Seattle)PRR13
SuperfamilyQ9NZ81
Human Protein AtlasENSG00000205352
Peptide AtlasQ9NZ81
HPRD13211
IPIIPI00470900   IPI00425994   IPI01021501   IPI01021333   IPI01021669   IPI01021961   IPI01021936   IPI01022381   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ81
IntAct (EBI)Q9NZ81
FunCoupENSG00000205352
BioGRIDPRR13
STRING (EMBL)PRR13
ZODIACPRR13
Ontologies - Pathways
QuickGOQ9NZ81
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkPRR13
Atlas of Cancer Signalling NetworkPRR13
Wikipedia pathwaysPRR13
Orthology - Evolution
OrthoDB54458
GeneTree (enSembl)ENSG00000205352
Phylogenetic Trees/Animal Genes : TreeFamPRR13
HOVERGENQ9NZ81
HOGENOMQ9NZ81
Homologs : HomoloGenePRR13
Homology/Alignments : Family Browser (UCSC)PRR13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR13
dbVarPRR13
ClinVarPRR13
1000_GenomesPRR13 
Exome Variant ServerPRR13
ExAC (Exome Aggregation Consortium)PRR13 (select the gene name)
Genetic variants : HAPMAP54458
Genomic Variants (DGV)PRR13 [DGVbeta]
DECIPHERPRR13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR13 
Mutations
ICGC Data PortalPRR13 
TCGA Data PortalPRR13 
Broad Tumor PortalPRR13
OASIS PortalPRR13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR13
DgiDB (Drug Gene Interaction Database)PRR13
DoCM (Curated mutations)PRR13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR13 (select a term)
intoGenPRR13
Cancer3DPRR13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610459   
Orphanet
MedgenPRR13
Genetic Testing Registry PRR13
NextProtQ9NZ81 [Medical]
TSGene54458
GENETestsPRR13
Huge Navigator PRR13 [HugePedia]
snp3D : Map Gene to Disease54458
BioCentury BCIQPRR13
ClinGenPRR13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54458
Chemical/Pharm GKB GenePA143485583
Clinical trialPRR13
Miscellaneous
canSAR (ICR)PRR13 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR13
EVEXPRR13
GoPubMedPRR13
iHOPPRR13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:33:01 CEST 2017

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