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PRR13 (proline rich 13)

Identity

Alias (NCBI)TXR1
HGNC (Hugo) PRR13
HGNC Alias symbFLJ23818
DKFZP564J157
LocusID (NCBI) 54458
Atlas_Id 40318
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53441734 and ends at 53446638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRR13 (12q13.13) / HNRNPA2B1 (7p15.2)PRR13 (12q13.13) / RPL38 (17q25.1)PRR13 (12q13.13) / RPL8 (8q24.3)
PRR13 (12q13.13) / VIM (10p13)WWC3 (Xp22.2) / PRR13 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PRR13   24528
Cards
Entrez_Gene (NCBI)PRR13    proline rich 13
AliasesTXR1
GeneCards (Weizmann)PRR13
Ensembl hg19 (Hinxton)ENSG00000205352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205352 [Gene_View]  ENSG00000205352 [Sequence]  chr12:53441734-53446638 [Contig_View]  PRR13 [Vega]
ICGC DataPortalENSG00000205352
TCGA cBioPortalPRR13
AceView (NCBI)PRR13
Genatlas (Paris)PRR13
SOURCE (Princeton)PRR13
Genetics Home Reference (NIH)PRR13
Genomic and cartography
GoldenPath hg38 (UCSC)PRR13  -     chr12:53441734-53446638 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR13  -     12q13.13   [Description]    (hg19-Feb_2009)
GoldenPathPRR13 - 12q13.13 [CytoView hg19]  PRR13 - 12q13.13 [CytoView hg38]
ImmunoBaseENSG00000205352
Genome Data Viewer NCBIPRR13 [Mapview hg19]  
OMIM610459   
Gene and transcription
Genbank (Entrez)AF217517 AK074398 BC001464 BC004512 BC014257
RefSeq transcript (Entrez)NM_001005354 NM_001005355 NM_018457
Consensus coding sequences : CCDS (NCBI)PRR13
Gene ExpressionPRR13 [ NCBI-GEO ]   PRR13 [ EBI - ARRAY_EXPRESS ]   PRR13 [ SEEK ]   PRR13 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR13 [ Firebrowse - Broad ]
GenevisibleExpression of PRR13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54458
GTEX Portal (Tissue expression)PRR13
Human Protein AtlasENSG00000205352-PRR13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ81
PhosPhoSitePlusQ9NZ81
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR13
SuperfamilyQ9NZ81
AlphaFold pdb e-kbQ9NZ81   
Human Protein Atlas [tissue]ENSG00000205352-PRR13 [tissue]
HPRD13211
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ81
IntAct (EBI)Q9NZ81
BioGRIDPRR13
STRING (EMBL)PRR13
ZODIACPRR13
Ontologies - Pathways
QuickGOQ9NZ81
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  cytosol  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  cytosol  
NDEx NetworkPRR13
Atlas of Cancer Signalling NetworkPRR13
Wikipedia pathwaysPRR13
Orthology - Evolution
OrthoDB54458
GeneTree (enSembl)ENSG00000205352
Phylogenetic Trees/Animal Genes : TreeFamPRR13
Homologs : HomoloGenePRR13
Homology/Alignments : Family Browser (UCSC)PRR13
Gene fusions - Rearrangements
Fusion : QuiverPRR13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR13
dbVarPRR13
ClinVarPRR13
MonarchPRR13
1000_GenomesPRR13 
Exome Variant ServerPRR13
GNOMAD BrowserENSG00000205352
Varsome BrowserPRR13
ACMGPRR13 variants
VarityQ9NZ81
Genomic Variants (DGV)PRR13 [DGVbeta]
DECIPHERPRR13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR13 
Mutations
ICGC Data PortalPRR13 
TCGA Data PortalPRR13 
Broad Tumor PortalPRR13
OASIS PortalPRR13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRR13
Mutations and Diseases : HGMDPRR13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPRR13
DgiDB (Drug Gene Interaction Database)PRR13
DoCM (Curated mutations)PRR13
CIViC (Clinical Interpretations of Variants in Cancer)PRR13
Cancer3DPRR13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610459   
Orphanet
DisGeNETPRR13
MedgenPRR13
Genetic Testing Registry PRR13
NextProtQ9NZ81 [Medical]
GENETestsPRR13
Target ValidationPRR13
Huge Navigator PRR13 [HugePedia]
ClinGenPRR13
Clinical trials, drugs, therapy
MyCancerGenomePRR13
Protein Interactions : CTDPRR13
Pharm GKB GenePA143485583
PharosQ9NZ81
Clinical trialPRR13
Miscellaneous
canSAR (ICR)PRR13
HarmonizomePRR13
DataMed IndexPRR13
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRR13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:03 CEST 2021

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