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PRR14 (proline rich 14)

Identity

Alias_symbol (synonym)MGC3121
Other alias-
HGNC (Hugo) PRR14
LocusID (NCBI) 78994
Atlas_Id 72258
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30662241 and ends at 30667734 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRR14 (16p11.2) / RPL23 (17q12)ZIM2 (19q13.43) / PRR14 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR14   28458
Cards
Entrez_Gene (NCBI)PRR14  78994  proline rich 14
Aliases
GeneCards (Weizmann)PRR14
Ensembl hg19 (Hinxton)ENSG00000156858 [Gene_View]  chr16:30662241-30667734 [Contig_View]  PRR14 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156858 [Gene_View]  chr16:30662241-30667734 [Contig_View]  PRR14 [Vega]
ICGC DataPortalENSG00000156858
TCGA cBioPortalPRR14
AceView (NCBI)PRR14
Genatlas (Paris)PRR14
WikiGenes78994
SOURCE (Princeton)PRR14
Genetics Home Reference (NIH)PRR14
Genomic and cartography
GoldenPath hg19 (UCSC)PRR14  -     chr16:30662241-30667734 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR14  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblPRR14 - 16p11.2 [CytoView hg19]  PRR14 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIPRR14 [Mapview hg19]  PRR14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074783 AK125716 BC000119 BC010232 BC011573
RefSeq transcript (Entrez)NM_024031
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)PRR14
Cluster EST : UnigeneHs.293629 [ NCBI ]
CGAP (NCI)Hs.293629
Alternative Splicing GalleryENSG00000156858
Gene ExpressionPRR14 [ NCBI-GEO ]   PRR14 [ EBI - ARRAY_EXPRESS ]   PRR14 [ SEEK ]   PRR14 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78994
GTEX Portal (Tissue expression)PRR14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWN1
Splice isoforms : SwissVarQ9BWN1
PhosPhoSitePlusQ9BWN1
Domains : Interpro (EBI)PRR14    Tantalus-like   
Domain families : Pfam (Sanger)Tantalus (PF15386)   
Domain families : Pfam (NCBI)pfam15386   
Conserved Domain (NCBI)PRR14
DMDM Disease mutations78994
Blocks (Seattle)PRR14
SuperfamilyQ9BWN1
Human Protein AtlasENSG00000156858
Peptide AtlasQ9BWN1
HPRD14541
IPIIPI00550815   IPI00386474   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWN1
IntAct (EBI)Q9BWN1
FunCoupENSG00000156858
BioGRIDPRR14
STRING (EMBL)PRR14
ZODIACPRR14
Ontologies - Pathways
QuickGOQ9BWN1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR14
Atlas of Cancer Signalling NetworkPRR14
Wikipedia pathwaysPRR14
Orthology - Evolution
OrthoDB78994
GeneTree (enSembl)ENSG00000156858
Phylogenetic Trees/Animal Genes : TreeFamPRR14
HOVERGENQ9BWN1
HOGENOMQ9BWN1
Homologs : HomoloGenePRR14
Homology/Alignments : Family Browser (UCSC)PRR14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR14
dbVarPRR14
ClinVarPRR14
1000_GenomesPRR14 
Exome Variant ServerPRR14
ExAC (Exome Aggregation Consortium)PRR14 (select the gene name)
Genetic variants : HAPMAP78994
Genomic Variants (DGV)PRR14 [DGVbeta]
DECIPHER (Syndromes)16:30662241-30667734  ENSG00000156858
CONAN: Copy Number AnalysisPRR14 
Mutations
ICGC Data PortalPRR14 
TCGA Data PortalPRR14 
Broad Tumor PortalPRR14
OASIS PortalPRR14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR14
DgiDB (Drug Gene Interaction Database)PRR14
DoCM (Curated mutations)PRR14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR14 (select a term)
intoGenPRR14
Cancer3DPRR14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR14
Genetic Testing Registry PRR14
NextProtQ9BWN1 [Medical]
TSGene78994
GENETestsPRR14
Huge Navigator PRR14 [HugePedia]
snp3D : Map Gene to Disease78994
BioCentury BCIQPRR14
ClinGenPRR14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78994
Chemical/Pharm GKB GenePA144596393
Clinical trialPRR14
Miscellaneous
canSAR (ICR)PRR14 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR14
EVEXPRR14
GoPubMedPRR14
iHOPPRR14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:47 CET 2017

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