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PRR14L (proline rich 14 like)

Identity

Alias_namesC22orf30
chromosome 22 open reading frame 30
proline rich 14-like
Alias_symbol (synonym)MGC50372
Other alias
HGNC (Hugo) PRR14L
LocusID (NCBI) 253143
Atlas_Id 72259
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 31681348 and ends at 31750134 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRR14L (22q12.2) / H1FX (3q21.3)PRR14L (22q12.2) / SMARCD2 (17q23.3)PRR14L (22q12.2) / SOX10 (22q13.1)
PRR14L (22q12.2) / USP11 (Xp11.23)PRR14L (22q12.2) / YWHAH (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR14L   28738
Cards
Entrez_Gene (NCBI)PRR14L  253143  proline rich 14 like
AliasesC22orf30
GeneCards (Weizmann)PRR14L
Ensembl hg19 (Hinxton)ENSG00000183530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183530 [Gene_View]  chr22:31681348-31750134 [Contig_View]  PRR14L [Vega]
ICGC DataPortalENSG00000183530
TCGA cBioPortalPRR14L
AceView (NCBI)PRR14L
Genatlas (Paris)PRR14L
WikiGenes253143
SOURCE (Princeton)PRR14L
Genetics Home Reference (NIH)PRR14L
Genomic and cartography
GoldenPath hg38 (UCSC)PRR14L  -     chr22:31681348-31750134 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR14L  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblPRR14L - 22q12.2 [CytoView hg19]  PRR14L - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIPRR14L [Mapview hg19]  PRR14L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055930 AK090566 AK123082 AK130944 BC040859
RefSeq transcript (Entrez)NM_173566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR14L
Cluster EST : UnigeneHs.438906 [ NCBI ]
CGAP (NCI)Hs.438906
Alternative Splicing GalleryENSG00000183530
Gene ExpressionPRR14L [ NCBI-GEO ]   PRR14L [ EBI - ARRAY_EXPRESS ]   PRR14L [ SEEK ]   PRR14L [ MEM ]
Gene Expression Viewer (FireBrowse)PRR14L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253143
GTEX Portal (Tissue expression)PRR14L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5THK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5THK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5THK1
Splice isoforms : SwissVarQ5THK1
PhosPhoSitePlusQ5THK1
Domains : Interpro (EBI)PRR14    Tantalus-like   
Domain families : Pfam (Sanger)Tantalus (PF15386)   
Domain families : Pfam (NCBI)pfam15386   
Conserved Domain (NCBI)PRR14L
DMDM Disease mutations253143
Blocks (Seattle)PRR14L
SuperfamilyQ5THK1
Human Protein AtlasENSG00000183530
Peptide AtlasQ5THK1
HPRD14665
IPIIPI00643747   IPI00854670   IPI00852797   IPI00217178   IPI00953575   IPI00878429   
Protein Interaction databases
DIP (DOE-UCLA)Q5THK1
IntAct (EBI)Q5THK1
FunCoupENSG00000183530
BioGRIDPRR14L
STRING (EMBL)PRR14L
ZODIACPRR14L
Ontologies - Pathways
QuickGOQ5THK1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR14L
Atlas of Cancer Signalling NetworkPRR14L
Wikipedia pathwaysPRR14L
Orthology - Evolution
OrthoDB253143
GeneTree (enSembl)ENSG00000183530
Phylogenetic Trees/Animal Genes : TreeFamPRR14L
HOVERGENQ5THK1
HOGENOMQ5THK1
Homologs : HomoloGenePRR14L
Homology/Alignments : Family Browser (UCSC)PRR14L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR14L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR14L
dbVarPRR14L
ClinVarPRR14L
1000_GenomesPRR14L 
Exome Variant ServerPRR14L
ExAC (Exome Aggregation Consortium)PRR14L (select the gene name)
Genetic variants : HAPMAP253143
Genomic Variants (DGV)PRR14L [DGVbeta]
DECIPHERPRR14L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR14L 
Mutations
ICGC Data PortalPRR14L 
TCGA Data PortalPRR14L 
Broad Tumor PortalPRR14L
OASIS PortalPRR14L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR14L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR14L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR14L
DgiDB (Drug Gene Interaction Database)PRR14L
DoCM (Curated mutations)PRR14L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR14L (select a term)
intoGenPRR14L
Cancer3DPRR14L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR14L
Genetic Testing Registry PRR14L
NextProtQ5THK1 [Medical]
TSGene253143
GENETestsPRR14L
Target ValidationPRR14L
Huge Navigator PRR14L [HugePedia]
snp3D : Map Gene to Disease253143
BioCentury BCIQPRR14L
ClinGenPRR14L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253143
Chemical/Pharm GKB GenePA145149425
Clinical trialPRR14L
Miscellaneous
canSAR (ICR)PRR14L (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR14L
EVEXPRR14L
GoPubMedPRR14L
iHOPPRR14L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:22 CEST 2017

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