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PRR15 (proline rich 15)

Identity

Other alias-
HGNC (Hugo) PRR15
LocusID (NCBI) 222171
Atlas_Id 72260
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 29563811 and ends at 29567295 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRR15 (7p14.3) / MAP7D1 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR15   22310
Cards
Entrez_Gene (NCBI)PRR15  222171  proline rich 15
Aliases
GeneCards (Weizmann)PRR15
Ensembl hg19 (Hinxton)ENSG00000176532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176532 [Gene_View]  chr7:29563811-29567295 [Contig_View]  PRR15 [Vega]
ICGC DataPortalENSG00000176532
TCGA cBioPortalPRR15
AceView (NCBI)PRR15
Genatlas (Paris)PRR15
WikiGenes222171
SOURCE (Princeton)PRR15
Genetics Home Reference (NIH)PRR15
Genomic and cartography
GoldenPath hg38 (UCSC)PRR15  -     chr7:29563811-29567295 +  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR15  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblPRR15 - 7p14.3 [CytoView hg19]  PRR15 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBIPRR15 [Mapview hg19]  PRR15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC018144 BC029131 FJ857942 HQ448380
RefSeq transcript (Entrez)NM_001329996 NM_001329997 NM_175887
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR15
Cluster EST : UnigeneHs.91109 [ NCBI ]
CGAP (NCI)Hs.91109
Alternative Splicing GalleryENSG00000176532
Gene ExpressionPRR15 [ NCBI-GEO ]   PRR15 [ EBI - ARRAY_EXPRESS ]   PRR15 [ SEEK ]   PRR15 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222171
GTEX Portal (Tissue expression)PRR15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV56
Splice isoforms : SwissVarQ8IV56
PhosPhoSitePlusQ8IV56
Domains : Interpro (EBI)PRR15   
Domain families : Pfam (Sanger)ATAD4 (PF15321)   
Domain families : Pfam (NCBI)pfam15321   
Conserved Domain (NCBI)PRR15
DMDM Disease mutations222171
Blocks (Seattle)PRR15
SuperfamilyQ8IV56
Human Protein AtlasENSG00000176532
Peptide AtlasQ8IV56
HPRD14136
IPIIPI00216880   IPI00916574   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV56
IntAct (EBI)Q8IV56
FunCoupENSG00000176532
BioGRIDPRR15
STRING (EMBL)PRR15
ZODIACPRR15
Ontologies - Pathways
QuickGOQ8IV56
Ontology : AmiGOmulticellular organism development  
Ontology : EGO-EBImulticellular organism development  
NDEx NetworkPRR15
Atlas of Cancer Signalling NetworkPRR15
Wikipedia pathwaysPRR15
Orthology - Evolution
OrthoDB222171
GeneTree (enSembl)ENSG00000176532
Phylogenetic Trees/Animal Genes : TreeFamPRR15
HOVERGENQ8IV56
HOGENOMQ8IV56
Homologs : HomoloGenePRR15
Homology/Alignments : Family Browser (UCSC)PRR15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR15
dbVarPRR15
ClinVarPRR15
1000_GenomesPRR15 
Exome Variant ServerPRR15
ExAC (Exome Aggregation Consortium)PRR15 (select the gene name)
Genetic variants : HAPMAP222171
Genomic Variants (DGV)PRR15 [DGVbeta]
DECIPHERPRR15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR15 
Mutations
ICGC Data PortalPRR15 
TCGA Data PortalPRR15 
Broad Tumor PortalPRR15
OASIS PortalPRR15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR15
DgiDB (Drug Gene Interaction Database)PRR15
DoCM (Curated mutations)PRR15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR15 (select a term)
intoGenPRR15
Cancer3DPRR15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR15
Genetic Testing Registry PRR15
NextProtQ8IV56 [Medical]
TSGene222171
GENETestsPRR15
Target ValidationPRR15
Huge Navigator PRR15 [HugePedia]
snp3D : Map Gene to Disease222171
BioCentury BCIQPRR15
ClinGenPRR15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222171
Chemical/Pharm GKB GenePA162400154
Clinical trialPRR15
Miscellaneous
canSAR (ICR)PRR15 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR15
EVEXPRR15
GoPubMedPRR15
iHOPPRR15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:22 CEST 2017

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