Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRR15L (proline rich 15-like)

Identity

Alias_namesATAD4
ATPase family, AAA domain containing 4
proline rich 15-like
Alias_symbol (synonym)MGC11242
Other alias
HGNC (Hugo) PRR15L
LocusID (NCBI) 79170
Atlas_Id 72261
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 46029334 and ends at 46035243 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRR15L (17q21.32) / KCNH4 (17q21.2)PRR15L (17q21.32) / RAB5C (17q21.2)PRR15L KCNH4
PRR15L RAB5C

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR15L   28149
Cards
Entrez_Gene (NCBI)PRR15L  79170  proline rich 15-like
AliasesATAD4
GeneCards (Weizmann)PRR15L
Ensembl hg19 (Hinxton)ENSG00000167183 [Gene_View]  chr17:46029334-46035243 [Contig_View]  PRR15L [Vega]
Ensembl hg38 (Hinxton)ENSG00000167183 [Gene_View]  chr17:46029334-46035243 [Contig_View]  PRR15L [Vega]
ICGC DataPortalENSG00000167183
TCGA cBioPortalPRR15L
AceView (NCBI)PRR15L
Genatlas (Paris)PRR15L
WikiGenes79170
SOURCE (Princeton)PRR15L
Genetics Home Reference (NIH)PRR15L
Genomic and cartography
GoldenPath hg19 (UCSC)PRR15L  -     chr17:46029334-46035243 -  17q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR15L  -     17q21.32   [Description]    (hg38-Dec_2013)
EnsemblPRR15L - 17q21.32 [CytoView hg19]  PRR15L - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIPRR15L [Mapview hg19]  PRR15L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA707319 AA916635 AK309589 BC002865 BM829856
RefSeq transcript (Entrez)NM_024320
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)PRR15L
Cluster EST : UnigeneHs.368260 [ NCBI ]
CGAP (NCI)Hs.368260
Alternative Splicing GalleryENSG00000167183
Gene ExpressionPRR15L [ NCBI-GEO ]   PRR15L [ EBI - ARRAY_EXPRESS ]   PRR15L [ SEEK ]   PRR15L [ MEM ]
Gene Expression Viewer (FireBrowse)PRR15L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79170
GTEX Portal (Tissue expression)PRR15L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU68
Splice isoforms : SwissVarQ9BU68
PhosPhoSitePlusQ9BU68
Domains : Interpro (EBI)PRR15   
Domain families : Pfam (Sanger)ATAD4 (PF15321)   
Domain families : Pfam (NCBI)pfam15321   
Conserved Domain (NCBI)PRR15L
DMDM Disease mutations79170
Blocks (Seattle)PRR15L
SuperfamilyQ9BU68
Human Protein AtlasENSG00000167183
Peptide AtlasQ9BU68
HPRD14412
IPIIPI00013335   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU68
IntAct (EBI)Q9BU68
FunCoupENSG00000167183
BioGRIDPRR15L
STRING (EMBL)PRR15L
ZODIACPRR15L
Ontologies - Pathways
QuickGOQ9BU68
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR15L
Atlas of Cancer Signalling NetworkPRR15L
Wikipedia pathwaysPRR15L
Orthology - Evolution
OrthoDB79170
GeneTree (enSembl)ENSG00000167183
Phylogenetic Trees/Animal Genes : TreeFamPRR15L
HOVERGENQ9BU68
HOGENOMQ9BU68
Homologs : HomoloGenePRR15L
Homology/Alignments : Family Browser (UCSC)PRR15L
Gene fusions - Rearrangements
Fusion: TCGAPRR15L KCNH4
Fusion: TCGAPRR15L RAB5C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR15L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR15L
dbVarPRR15L
ClinVarPRR15L
1000_GenomesPRR15L 
Exome Variant ServerPRR15L
ExAC (Exome Aggregation Consortium)PRR15L (select the gene name)
Genetic variants : HAPMAP79170
Genomic Variants (DGV)PRR15L [DGVbeta]
DECIPHER (Syndromes)17:46029334-46035243  ENSG00000167183
CONAN: Copy Number AnalysisPRR15L 
Mutations
ICGC Data PortalPRR15L 
TCGA Data PortalPRR15L 
Broad Tumor PortalPRR15L
OASIS PortalPRR15L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR15L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR15L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR15L
DgiDB (Drug Gene Interaction Database)PRR15L
DoCM (Curated mutations)PRR15L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR15L (select a term)
intoGenPRR15L
Cancer3DPRR15L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR15L
Genetic Testing Registry PRR15L
NextProtQ9BU68 [Medical]
TSGene79170
GENETestsPRR15L
Huge Navigator PRR15L [HugePedia]
snp3D : Map Gene to Disease79170
BioCentury BCIQPRR15L
ClinGenPRR15L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79170
Chemical/Pharm GKB GenePA165432527
Clinical trialPRR15L
Miscellaneous
canSAR (ICR)PRR15L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR15L
EVEXPRR15L
GoPubMedPRR15L
iHOPPRR15L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:39:48 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.