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PRR16 (proline rich 16)

Identity

Alias_symbol (synonym)DSC54
Other aliasLARGEN
HGNC (Hugo) PRR16
LocusID (NCBI) 51334
Atlas_Id 72262
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 120464278 and ends at 120687330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TDRD7 (9q22.33) / PRR16 (5q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR16   29654
Cards
Entrez_Gene (NCBI)PRR16  51334  proline rich 16
AliasesDSC54; LARGEN
GeneCards (Weizmann)PRR16
Ensembl hg19 (Hinxton)ENSG00000184838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184838 [Gene_View]  chr5:120464278-120687330 [Contig_View]  PRR16 [Vega]
ICGC DataPortalENSG00000184838
TCGA cBioPortalPRR16
AceView (NCBI)PRR16
Genatlas (Paris)PRR16
WikiGenes51334
SOURCE (Princeton)PRR16
Genetics Home Reference (NIH)PRR16
Genomic and cartography
GoldenPath hg38 (UCSC)PRR16  -     chr5:120464278-120687330 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR16  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblPRR16 - 5q23.1 [CytoView hg19]  PRR16 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBIPRR16 [Mapview hg19]  PRR16 [Mapview hg38]
OMIM615931   
Gene and transcription
Genbank (Entrez)AF242769 AI572206 BC038838 BC092474 BM728431
RefSeq transcript (Entrez)NM_001300783 NM_001308087 NM_001308088 NM_016644
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR16
Cluster EST : UnigeneHs.681707 [ NCBI ]
CGAP (NCI)Hs.681707
Alternative Splicing GalleryENSG00000184838
Gene ExpressionPRR16 [ NCBI-GEO ]   PRR16 [ EBI - ARRAY_EXPRESS ]   PRR16 [ SEEK ]   PRR16 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51334
GTEX Portal (Tissue expression)PRR16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ569H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ569H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ569H4
Splice isoforms : SwissVarQ569H4
PhosPhoSitePlusQ569H4
Domains : Interpro (EBI)DUF4589   
Domain families : Pfam (Sanger)DUF4589 (PF15252)   
Domain families : Pfam (NCBI)pfam15252   
Conserved Domain (NCBI)PRR16
DMDM Disease mutations51334
Blocks (Seattle)PRR16
SuperfamilyQ569H4
Human Protein AtlasENSG00000184838
Peptide AtlasQ569H4
HPRD14239
IPIIPI00555909   IPI00868998   IPI00747522   IPI00967469   
Protein Interaction databases
DIP (DOE-UCLA)Q569H4
IntAct (EBI)Q569H4
FunCoupENSG00000184838
BioGRIDPRR16
STRING (EMBL)PRR16
ZODIACPRR16
Ontologies - Pathways
QuickGOQ569H4
Ontology : AmiGOprotein binding  positive regulation of translation  positive regulation of cell size  
Ontology : EGO-EBIprotein binding  positive regulation of translation  positive regulation of cell size  
NDEx NetworkPRR16
Atlas of Cancer Signalling NetworkPRR16
Wikipedia pathwaysPRR16
Orthology - Evolution
OrthoDB51334
GeneTree (enSembl)ENSG00000184838
Phylogenetic Trees/Animal Genes : TreeFamPRR16
HOVERGENQ569H4
HOGENOMQ569H4
Homologs : HomoloGenePRR16
Homology/Alignments : Family Browser (UCSC)PRR16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR16
dbVarPRR16
ClinVarPRR16
1000_GenomesPRR16 
Exome Variant ServerPRR16
ExAC (Exome Aggregation Consortium)PRR16 (select the gene name)
Genetic variants : HAPMAP51334
Genomic Variants (DGV)PRR16 [DGVbeta]
DECIPHERPRR16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR16 
Mutations
ICGC Data PortalPRR16 
TCGA Data PortalPRR16 
Broad Tumor PortalPRR16
OASIS PortalPRR16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR16
DgiDB (Drug Gene Interaction Database)PRR16
DoCM (Curated mutations)PRR16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR16 (select a term)
intoGenPRR16
Cancer3DPRR16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615931   
Orphanet
MedgenPRR16
Genetic Testing Registry PRR16
NextProtQ569H4 [Medical]
TSGene51334
GENETestsPRR16
Target ValidationPRR16
Huge Navigator PRR16 [HugePedia]
snp3D : Map Gene to Disease51334
BioCentury BCIQPRR16
ClinGenPRR16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51334
Chemical/Pharm GKB GenePA162400155
Clinical trialPRR16
Miscellaneous
canSAR (ICR)PRR16 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR16
EVEXPRR16
GoPubMedPRR16
iHOPPRR16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:30 CEST 2017

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