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PRR18 (proline rich 18)

Identity

Alias_namesproline rich region 18
Alias_symbol (synonym)MGC35308
Other alias-
HGNC (Hugo) PRR18
LocusID (NCBI) 285800
Atlas_Id 72263
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 166305680 and ends at 166308383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JCHAIN (4q13.3) / PRR18 (6q27)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR18   28574
Cards
Entrez_Gene (NCBI)PRR18  285800  proline rich 18
Aliases
GeneCards (Weizmann)PRR18
Ensembl hg19 (Hinxton)ENSG00000176381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176381 [Gene_View]  ENSG00000176381 [Sequence]  chr6:166305680-166308383 [Contig_View]  PRR18 [Vega]
ICGC DataPortalENSG00000176381
TCGA cBioPortalPRR18
AceView (NCBI)PRR18
Genatlas (Paris)PRR18
WikiGenes285800
SOURCE (Princeton)PRR18
Genetics Home Reference (NIH)PRR18
Genomic and cartography
GoldenPath hg38 (UCSC)PRR18  -     chr6:166305680-166308383 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR18  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblPRR18 - 6q27 [CytoView hg19]  PRR18 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIPRR18 [Mapview hg19]  PRR18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034775
RefSeq transcript (Entrez)NM_175922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR18
Cluster EST : UnigeneHs.731862 [ NCBI ]
CGAP (NCI)Hs.731862
Alternative Splicing GalleryENSG00000176381
Gene ExpressionPRR18 [ NCBI-GEO ]   PRR18 [ EBI - ARRAY_EXPRESS ]   PRR18 [ SEEK ]   PRR18 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285800
GTEX Portal (Tissue expression)PRR18
Human Protein AtlasENSG00000176381-PRR18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4B5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4B5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4B5
Splice isoforms : SwissVarQ8N4B5
PhosPhoSitePlusQ8N4B5
Domains : Interpro (EBI)PRR18   
Domain families : Pfam (Sanger)PRR18 (PF15671)   
Domain families : Pfam (NCBI)pfam15671   
Conserved Domain (NCBI)PRR18
DMDM Disease mutations285800
Blocks (Seattle)PRR18
SuperfamilyQ8N4B5
Human Protein Atlas [tissue]ENSG00000176381-PRR18 [tissue]
Peptide AtlasQ8N4B5
HPRD17533
IPIIPI00166675   IPI00977532   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4B5
IntAct (EBI)Q8N4B5
FunCoupENSG00000176381
BioGRIDPRR18
STRING (EMBL)PRR18
ZODIACPRR18
Ontologies - Pathways
QuickGOQ8N4B5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR18
Atlas of Cancer Signalling NetworkPRR18
Wikipedia pathwaysPRR18
Orthology - Evolution
OrthoDB285800
GeneTree (enSembl)ENSG00000176381
Phylogenetic Trees/Animal Genes : TreeFamPRR18
HOVERGENQ8N4B5
HOGENOMQ8N4B5
Homologs : HomoloGenePRR18
Homology/Alignments : Family Browser (UCSC)PRR18
Gene fusions - Rearrangements
Fusion : QuiverPRR18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR18
dbVarPRR18
ClinVarPRR18
1000_GenomesPRR18 
Exome Variant ServerPRR18
ExAC (Exome Aggregation Consortium)ENSG00000176381
GNOMAD BrowserENSG00000176381
Varsome BrowserPRR18
Genetic variants : HAPMAP285800
Genomic Variants (DGV)PRR18 [DGVbeta]
DECIPHERPRR18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR18 
Mutations
ICGC Data PortalPRR18 
TCGA Data PortalPRR18 
Broad Tumor PortalPRR18
OASIS PortalPRR18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR18
DgiDB (Drug Gene Interaction Database)PRR18
DoCM (Curated mutations)PRR18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR18 (select a term)
intoGenPRR18
Cancer3DPRR18(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR18
MedgenPRR18
Genetic Testing Registry PRR18
NextProtQ8N4B5 [Medical]
TSGene285800
GENETestsPRR18
Target ValidationPRR18
Huge Navigator PRR18 [HugePedia]
snp3D : Map Gene to Disease285800
BioCentury BCIQPRR18
ClinGenPRR18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285800
Chemical/Pharm GKB GenePA162400157
Clinical trialPRR18
Miscellaneous
canSAR (ICR)PRR18 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR18
EVEXPRR18
GoPubMedPRR18
iHOPPRR18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:25:13 CEST 2018

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