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PRR19 (proline rich 19)

Identity

Alias_symbol (synonym)MGC70924
Other alias-
HGNC (Hugo) PRR19
LocusID (NCBI) 284338
Atlas_Id 72264
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42302132 and ends at 42310821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRR19 (19q13.2) / PPP1R37 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR19   33728
Cards
Entrez_Gene (NCBI)PRR19  284338  proline rich 19
Aliases
GeneCards (Weizmann)PRR19
Ensembl hg19 (Hinxton)ENSG00000188368 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188368 [Gene_View]  chr19:42302132-42310821 [Contig_View]  PRR19 [Vega]
ICGC DataPortalENSG00000188368
TCGA cBioPortalPRR19
AceView (NCBI)PRR19
Genatlas (Paris)PRR19
WikiGenes284338
SOURCE (Princeton)PRR19
Genetics Home Reference (NIH)PRR19
Genomic and cartography
GoldenPath hg38 (UCSC)PRR19  -     chr19:42302132-42310821 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR19  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblPRR19 - 19q13.2 [CytoView hg19]  PRR19 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIPRR19 [Mapview hg19]  PRR19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI208291 AK124116 AK291528 AW451766 BC063021
RefSeq transcript (Entrez)NM_199285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR19
Cluster EST : UnigeneHs.585901 [ NCBI ]
CGAP (NCI)Hs.585901
Alternative Splicing GalleryENSG00000188368
Gene ExpressionPRR19 [ NCBI-GEO ]   PRR19 [ EBI - ARRAY_EXPRESS ]   PRR19 [ SEEK ]   PRR19 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284338
GTEX Portal (Tissue expression)PRR19
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJB7
Splice isoforms : SwissVarA6NJB7
PhosPhoSitePlusA6NJB7
Domains : Interpro (EBI)Pro-rich_19   
Domain families : Pfam (Sanger)Pro-rich_19 (PF15455)   
Domain families : Pfam (NCBI)pfam15455   
Conserved Domain (NCBI)PRR19
DMDM Disease mutations284338
Blocks (Seattle)PRR19
SuperfamilyA6NJB7
Human Protein AtlasENSG00000188368
Peptide AtlasA6NJB7
HPRD14703
IPIIPI00413916   IPI00890817   
Protein Interaction databases
DIP (DOE-UCLA)A6NJB7
IntAct (EBI)A6NJB7
FunCoupENSG00000188368
BioGRIDPRR19
STRING (EMBL)PRR19
ZODIACPRR19
Ontologies - Pathways
QuickGOA6NJB7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPRR19
Atlas of Cancer Signalling NetworkPRR19
Wikipedia pathwaysPRR19
Orthology - Evolution
OrthoDB284338
GeneTree (enSembl)ENSG00000188368
Phylogenetic Trees/Animal Genes : TreeFamPRR19
HOVERGENA6NJB7
HOGENOMA6NJB7
Homologs : HomoloGenePRR19
Homology/Alignments : Family Browser (UCSC)PRR19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR19
dbVarPRR19
ClinVarPRR19
1000_GenomesPRR19 
Exome Variant ServerPRR19
ExAC (Exome Aggregation Consortium)PRR19 (select the gene name)
Genetic variants : HAPMAP284338
Genomic Variants (DGV)PRR19 [DGVbeta]
DECIPHERPRR19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR19 
Mutations
ICGC Data PortalPRR19 
TCGA Data PortalPRR19 
Broad Tumor PortalPRR19
OASIS PortalPRR19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR19
DgiDB (Drug Gene Interaction Database)PRR19
DoCM (Curated mutations)PRR19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR19 (select a term)
intoGenPRR19
Cancer3DPRR19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR19
Genetic Testing Registry PRR19
NextProtA6NJB7 [Medical]
TSGene284338
GENETestsPRR19
Target ValidationPRR19
Huge Navigator PRR19 [HugePedia]
snp3D : Map Gene to Disease284338
BioCentury BCIQPRR19
ClinGenPRR19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284338
Chemical/Pharm GKB GenePA162400164
Clinical trialPRR19
Miscellaneous
canSAR (ICR)PRR19 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR19
EVEXPRR19
GoPubMedPRR19
iHOPPRR19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:22 CEST 2017

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