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PRR20A (proline rich 20A)

Identity

Alias_namesPRR20
proline rich 20
Alias_symbol (synonym)FLJ40296
Other alias
HGNC (Hugo) PRR20A
LocusID (NCBI) 122183
Atlas_Id 72265
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 57140918 and ends at 57143939 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR20A   24754
Cards
Entrez_Gene (NCBI)PRR20A  122183  proline rich 20A
AliasesPRR20
GeneCards (Weizmann)PRR20A
Ensembl hg19 (Hinxton)ENSG00000204919 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204919 [Gene_View]  chr13:57140918-57143939 [Contig_View]  PRR20A [Vega]
ICGC DataPortalENSG00000204919
TCGA cBioPortalPRR20A
AceView (NCBI)PRR20A
Genatlas (Paris)PRR20A
WikiGenes122183
SOURCE (Princeton)PRR20A
Genetics Home Reference (NIH)PRR20A
Genomic and cartography
GoldenPath hg38 (UCSC)PRR20A  -     chr13:57140918-57143939 +  13q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR20A  -     13q21.1   [Description]    (hg19-Feb_2009)
EnsemblPRR20A - 13q21.1 [CytoView hg19]  PRR20A - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBIPRR20A [Mapview hg19]  PRR20A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097615 BC120931 BC120932
RefSeq transcript (Entrez)NM_198441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR20A
Cluster EST : UnigeneHs.723090 [ NCBI ]
CGAP (NCI)Hs.723090
Alternative Splicing GalleryENSG00000204919
Gene ExpressionPRR20A [ NCBI-GEO ]   PRR20A [ EBI - ARRAY_EXPRESS ]   PRR20A [ SEEK ]   PRR20A [ MEM ]
Gene Expression Viewer (FireBrowse)PRR20A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122183
GTEX Portal (Tissue expression)PRR20A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86496   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86496  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86496
Splice isoforms : SwissVarP86496
PhosPhoSitePlusP86496
Domains : Interpro (EBI)PRR20   
Domain families : Pfam (Sanger)PRR20 (PF15708)   
Domain families : Pfam (NCBI)pfam15708   
Conserved Domain (NCBI)PRR20A
DMDM Disease mutations122183
Blocks (Seattle)PRR20A
SuperfamilyP86496
Human Protein AtlasENSG00000204919
Peptide AtlasP86496
HPRD13445
IPIIPI00167346   
Protein Interaction databases
DIP (DOE-UCLA)P86496
IntAct (EBI)P86496
FunCoupENSG00000204919
BioGRIDPRR20A
STRING (EMBL)PRR20A
ZODIACPRR20A
Ontologies - Pathways
QuickGOP86496
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR20A
Atlas of Cancer Signalling NetworkPRR20A
Wikipedia pathwaysPRR20A
Orthology - Evolution
OrthoDB122183
GeneTree (enSembl)ENSG00000204919
Phylogenetic Trees/Animal Genes : TreeFamPRR20A
HOVERGENP86496
HOGENOMP86496
Homologs : HomoloGenePRR20A
Homology/Alignments : Family Browser (UCSC)PRR20A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR20A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR20A
dbVarPRR20A
ClinVarPRR20A
1000_GenomesPRR20A 
Exome Variant ServerPRR20A
ExAC (Exome Aggregation Consortium)PRR20A (select the gene name)
Genetic variants : HAPMAP122183
Genomic Variants (DGV)PRR20A [DGVbeta]
DECIPHERPRR20A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR20A 
Mutations
ICGC Data PortalPRR20A 
TCGA Data PortalPRR20A 
Broad Tumor PortalPRR20A
OASIS PortalPRR20A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR20A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR20A
DgiDB (Drug Gene Interaction Database)PRR20A
DoCM (Curated mutations)PRR20A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR20A (select a term)
intoGenPRR20A
Cancer3DPRR20A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR20A
Genetic Testing Registry PRR20A
NextProtP86496 [Medical]
TSGene122183
GENETestsPRR20A
Target ValidationPRR20A
Huge Navigator PRR20A [HugePedia]
snp3D : Map Gene to Disease122183
BioCentury BCIQPRR20A
ClinGenPRR20A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122183
Chemical/Pharm GKB GenePA165505341
Clinical trialPRR20A
Miscellaneous
canSAR (ICR)PRR20A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR20A
EVEXPRR20A
GoPubMedPRR20A
iHOPPRR20A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:30 CEST 2017

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