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PRR20B (proline rich 20B)

Identity

Other alias-
HGNC (Hugo) PRR20B
LocusID (NCBI) 729233
Atlas_Id 72266
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 57140918 and ends at 57143939 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR20B   37220
Cards
Entrez_Gene (NCBI)PRR20B  729233  proline rich 20B
Aliases
GeneCards (Weizmann)PRR20B
Ensembl hg19 (Hinxton)ENSG00000204918 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204918 [Gene_View]  chr13:57140918-57143939 [Contig_View]  PRR20B [Vega]
ICGC DataPortalENSG00000204918
TCGA cBioPortalPRR20B
AceView (NCBI)PRR20B
Genatlas (Paris)PRR20B
WikiGenes729233
SOURCE (Princeton)PRR20B
Genetics Home Reference (NIH)PRR20B
Genomic and cartography
GoldenPath hg38 (UCSC)PRR20B  -     chr13:57140918-57143939 +  13q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR20B  -     13q21.1   [Description]    (hg19-Feb_2009)
EnsemblPRR20B - 13q21.1 [CytoView hg19]  PRR20B - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBIPRR20B [Mapview hg19]  PRR20B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097615 BC120931 BC120932
RefSeq transcript (Entrez)NM_001130404
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR20B
Cluster EST : UnigeneHs.723090 [ NCBI ]
CGAP (NCI)Hs.723090
Alternative Splicing GalleryENSG00000204918
Gene ExpressionPRR20B [ NCBI-GEO ]   PRR20B [ EBI - ARRAY_EXPRESS ]   PRR20B [ SEEK ]   PRR20B [ MEM ]
Gene Expression Viewer (FireBrowse)PRR20B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729233
GTEX Portal (Tissue expression)PRR20B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86481   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86481  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86481
Splice isoforms : SwissVarP86481
PhosPhoSitePlusP86481
Domains : Interpro (EBI)PRR20   
Domain families : Pfam (Sanger)PRR20 (PF15708)   
Domain families : Pfam (NCBI)pfam15708   
Conserved Domain (NCBI)PRR20B
DMDM Disease mutations729233
Blocks (Seattle)PRR20B
SuperfamilyP86481
Human Protein AtlasENSG00000204918
Peptide AtlasP86481
Protein Interaction databases
DIP (DOE-UCLA)P86481
IntAct (EBI)P86481
FunCoupENSG00000204918
BioGRIDPRR20B
STRING (EMBL)PRR20B
ZODIACPRR20B
Ontologies - Pathways
QuickGOP86481
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR20B
Atlas of Cancer Signalling NetworkPRR20B
Wikipedia pathwaysPRR20B
Orthology - Evolution
OrthoDB729233
GeneTree (enSembl)ENSG00000204918
Phylogenetic Trees/Animal Genes : TreeFamPRR20B
HOVERGENP86481
HOGENOMP86481
Homologs : HomoloGenePRR20B
Homology/Alignments : Family Browser (UCSC)PRR20B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR20B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR20B
dbVarPRR20B
ClinVarPRR20B
1000_GenomesPRR20B 
Exome Variant ServerPRR20B
ExAC (Exome Aggregation Consortium)PRR20B (select the gene name)
Genetic variants : HAPMAP729233
Genomic Variants (DGV)PRR20B [DGVbeta]
DECIPHERPRR20B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR20B 
Mutations
ICGC Data PortalPRR20B 
TCGA Data PortalPRR20B 
Broad Tumor PortalPRR20B
OASIS PortalPRR20B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR20B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR20B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR20B
DgiDB (Drug Gene Interaction Database)PRR20B
DoCM (Curated mutations)PRR20B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR20B (select a term)
intoGenPRR20B
Cancer3DPRR20B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR20B
Genetic Testing Registry PRR20B
NextProtP86481 [Medical]
TSGene729233
GENETestsPRR20B
Target ValidationPRR20B
Huge Navigator PRR20B [HugePedia]
snp3D : Map Gene to Disease729233
BioCentury BCIQPRR20B
ClinGenPRR20B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729233
Chemical/Pharm GKB GenePA165505352
Clinical trialPRR20B
Miscellaneous
canSAR (ICR)PRR20B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR20B
EVEXPRR20B
GoPubMedPRR20B
iHOPPRR20B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:31 CEST 2017

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