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PRR20C (proline rich 20C)

Identity

Other alias-
HGNC (Hugo) PRR20C
LocusID (NCBI) 729240
Atlas_Id 72267
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 57140918 and ends at 57143939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR20C   37221
Cards
Entrez_Gene (NCBI)PRR20C  729240  proline rich 20C
Aliases
GeneCards (Weizmann)PRR20C
Ensembl hg19 (Hinxton)ENSG00000229665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229665 [Gene_View]  chr13:57140918-57143939 [Contig_View]  PRR20C [Vega]
ICGC DataPortalENSG00000229665
TCGA cBioPortalPRR20C
AceView (NCBI)PRR20C
Genatlas (Paris)PRR20C
WikiGenes729240
SOURCE (Princeton)PRR20C
Genetics Home Reference (NIH)PRR20C
Genomic and cartography
GoldenPath hg38 (UCSC)PRR20C  -     chr13:57140918-57143939 +  13q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR20C  -     13q21.1   [Description]    (hg19-Feb_2009)
EnsemblPRR20C - 13q21.1 [CytoView hg19]  PRR20C - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBIPRR20C [Mapview hg19]  PRR20C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097615 BC120931 BC120932
RefSeq transcript (Entrez)NM_001130405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR20C
Cluster EST : UnigeneHs.723090 [ NCBI ]
CGAP (NCI)Hs.723090
Alternative Splicing GalleryENSG00000229665
Gene ExpressionPRR20C [ NCBI-GEO ]   PRR20C [ EBI - ARRAY_EXPRESS ]   PRR20C [ SEEK ]   PRR20C [ MEM ]
Gene Expression Viewer (FireBrowse)PRR20C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729240
GTEX Portal (Tissue expression)PRR20C
Human Protein AtlasENSG00000229665-PRR20C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86479   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86479  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86479
Splice isoforms : SwissVarP86479
PhosPhoSitePlusP86479
Domains : Interpro (EBI)PRR20   
Domain families : Pfam (Sanger)PRR20 (PF15708)   
Domain families : Pfam (NCBI)pfam15708   
Conserved Domain (NCBI)PRR20C
DMDM Disease mutations729240
Blocks (Seattle)PRR20C
SuperfamilyP86479
Human Protein Atlas [tissue]ENSG00000229665-PRR20C [tissue]
Peptide AtlasP86479
Protein Interaction databases
DIP (DOE-UCLA)P86479
IntAct (EBI)P86479
FunCoupENSG00000229665
BioGRIDPRR20C
STRING (EMBL)PRR20C
ZODIACPRR20C
Ontologies - Pathways
QuickGOP86479
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPRR20C
Atlas of Cancer Signalling NetworkPRR20C
Wikipedia pathwaysPRR20C
Orthology - Evolution
OrthoDB729240
GeneTree (enSembl)ENSG00000229665
Phylogenetic Trees/Animal Genes : TreeFamPRR20C
HOVERGENP86479
HOGENOMP86479
Homologs : HomoloGenePRR20C
Homology/Alignments : Family Browser (UCSC)PRR20C
Gene fusions - Rearrangements
Tumor Fusion PortalPRR20C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR20C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR20C
dbVarPRR20C
ClinVarPRR20C
1000_GenomesPRR20C 
Exome Variant ServerPRR20C
ExAC (Exome Aggregation Consortium)ENSG00000229665
GNOMAD BrowserENSG00000229665
Genetic variants : HAPMAP729240
Genomic Variants (DGV)PRR20C [DGVbeta]
DECIPHERPRR20C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR20C 
Mutations
ICGC Data PortalPRR20C 
TCGA Data PortalPRR20C 
Broad Tumor PortalPRR20C
OASIS PortalPRR20C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR20C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR20C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR20C
DgiDB (Drug Gene Interaction Database)PRR20C
DoCM (Curated mutations)PRR20C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR20C (select a term)
intoGenPRR20C
Cancer3DPRR20C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR20C
MedgenPRR20C
Genetic Testing Registry PRR20C
NextProtP86479 [Medical]
TSGene729240
GENETestsPRR20C
Target ValidationPRR20C
Huge Navigator PRR20C [HugePedia]
snp3D : Map Gene to Disease729240
BioCentury BCIQPRR20C
ClinGenPRR20C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729240
Chemical/Pharm GKB GenePA165505363
Clinical trialPRR20C
Miscellaneous
canSAR (ICR)PRR20C (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR20C
EVEXPRR20C
GoPubMedPRR20C
iHOPPRR20C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:28:49 CET 2017

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