Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRR20D (proline rich 20D)

Identity

Other alias-
HGNC (Hugo) PRR20D
LocusID (NCBI) 729246
Atlas_Id 72268
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 57715052 and ends at 57718073 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR20D   37222
Cards
Entrez_Gene (NCBI)PRR20D  729246  proline rich 20D
Aliases
GeneCards (Weizmann)PRR20D
Ensembl hg19 (Hinxton)ENSG00000227151 [Gene_View]  chr13:57715052-57718073 [Contig_View]  PRR20D [Vega]
Ensembl hg38 (Hinxton)ENSG00000227151 [Gene_View]  chr13:57715052-57718073 [Contig_View]  PRR20D [Vega]
ICGC DataPortalENSG00000227151
TCGA cBioPortalPRR20D
AceView (NCBI)PRR20D
Genatlas (Paris)PRR20D
WikiGenes729246
SOURCE (Princeton)PRR20D
Genetics Home Reference (NIH)PRR20D
Genomic and cartography
GoldenPath hg19 (UCSC)PRR20D  -     chr13:57715052-57718073 +  13q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR20D  -     13q21.1   [Description]    (hg38-Dec_2013)
EnsemblPRR20D - 13q21.1 [CytoView hg19]  PRR20D - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBIPRR20D [Mapview hg19]  PRR20D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097615 BC120931 BC120932
RefSeq transcript (Entrez)NM_001130406
RefSeq genomic (Entrez)NC_000013 NT_024524
Consensus coding sequences : CCDS (NCBI)PRR20D
Cluster EST : UnigeneHs.723090 [ NCBI ]
CGAP (NCI)Hs.723090
Alternative Splicing GalleryENSG00000227151
Gene ExpressionPRR20D [ NCBI-GEO ]   PRR20D [ EBI - ARRAY_EXPRESS ]   PRR20D [ SEEK ]   PRR20D [ MEM ]
Gene Expression Viewer (FireBrowse)PRR20D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729246
GTEX Portal (Tissue expression)PRR20D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86480   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86480  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86480
Splice isoforms : SwissVarP86480
PhosPhoSitePlusP86480
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR20D
DMDM Disease mutations729246
Blocks (Seattle)PRR20D
SuperfamilyP86480
Human Protein AtlasENSG00000227151
Peptide AtlasP86480
Protein Interaction databases
DIP (DOE-UCLA)P86480
IntAct (EBI)P86480
FunCoupENSG00000227151
BioGRIDPRR20D
STRING (EMBL)PRR20D
ZODIACPRR20D
Ontologies - Pathways
QuickGOP86480
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR20D
Atlas of Cancer Signalling NetworkPRR20D
Wikipedia pathwaysPRR20D
Orthology - Evolution
OrthoDB729246
GeneTree (enSembl)ENSG00000227151
Phylogenetic Trees/Animal Genes : TreeFamPRR20D
HOVERGENP86480
HOGENOMP86480
Homologs : HomoloGenePRR20D
Homology/Alignments : Family Browser (UCSC)PRR20D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR20D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR20D
dbVarPRR20D
ClinVarPRR20D
1000_GenomesPRR20D 
Exome Variant ServerPRR20D
ExAC (Exome Aggregation Consortium)PRR20D (select the gene name)
Genetic variants : HAPMAP729246
Genomic Variants (DGV)PRR20D [DGVbeta]
DECIPHER (Syndromes)13:57715052-57718073  ENSG00000227151
CONAN: Copy Number AnalysisPRR20D 
Mutations
ICGC Data PortalPRR20D 
TCGA Data PortalPRR20D 
Broad Tumor PortalPRR20D
OASIS PortalPRR20D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR20D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR20D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR20D
DgiDB (Drug Gene Interaction Database)PRR20D
DoCM (Curated mutations)PRR20D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR20D (select a term)
intoGenPRR20D
Cancer3DPRR20D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR20D
Genetic Testing Registry PRR20D
NextProtP86480 [Medical]
TSGene729246
GENETestsPRR20D
Huge Navigator PRR20D [HugePedia]
snp3D : Map Gene to Disease729246
BioCentury BCIQPRR20D
ClinGenPRR20D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729246
Chemical/Pharm GKB GenePA165505462
Clinical trialPRR20D
Miscellaneous
canSAR (ICR)PRR20D (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR20D
EVEXPRR20D
GoPubMedPRR20D
iHOPPRR20D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:39:49 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.