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PRR20E (proline rich 20E)

Identity

Other alias-
HGNC (Hugo) PRR20E
LocusID (NCBI) 729250
Atlas_Id 72269
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 57140918 and ends at 57143939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR20E   37223
Cards
Entrez_Gene (NCBI)PRR20E  729250  proline rich 20E
Aliases
GeneCards (Weizmann)PRR20E
Ensembl hg19 (Hinxton)ENSG00000234278 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234278 [Gene_View]  chr13:57140918-57143939 [Contig_View]  PRR20E [Vega]
ICGC DataPortalENSG00000234278
TCGA cBioPortalPRR20E
AceView (NCBI)PRR20E
Genatlas (Paris)PRR20E
WikiGenes729250
SOURCE (Princeton)PRR20E
Genetics Home Reference (NIH)PRR20E
Genomic and cartography
GoldenPath hg38 (UCSC)PRR20E  -     chr13:57140918-57143939 +  13q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR20E  -     13q21.1   [Description]    (hg19-Feb_2009)
EnsemblPRR20E - 13q21.1 [CytoView hg19]  PRR20E - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBIPRR20E [Mapview hg19]  PRR20E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097615 BC120931 BC120932
RefSeq transcript (Entrez)NM_001130407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR20E
Cluster EST : UnigeneHs.723090 [ NCBI ]
CGAP (NCI)Hs.723090
Alternative Splicing GalleryENSG00000234278
Gene ExpressionPRR20E [ NCBI-GEO ]   PRR20E [ EBI - ARRAY_EXPRESS ]   PRR20E [ SEEK ]   PRR20E [ MEM ]
Gene Expression Viewer (FireBrowse)PRR20E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729250
GTEX Portal (Tissue expression)PRR20E
Human Protein AtlasENSG00000234278-PRR20E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86478
Splice isoforms : SwissVarP86478
PhosPhoSitePlusP86478
Domains : Interpro (EBI)PRR20   
Domain families : Pfam (Sanger)PRR20 (PF15708)   
Domain families : Pfam (NCBI)pfam15708   
Conserved Domain (NCBI)PRR20E
DMDM Disease mutations729250
Blocks (Seattle)PRR20E
SuperfamilyP86478
Human Protein Atlas [tissue]ENSG00000234278-PRR20E [tissue]
Peptide AtlasP86478
Protein Interaction databases
DIP (DOE-UCLA)P86478
IntAct (EBI)P86478
FunCoupENSG00000234278
BioGRIDPRR20E
STRING (EMBL)PRR20E
ZODIACPRR20E
Ontologies - Pathways
QuickGOP86478
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPRR20E
Atlas of Cancer Signalling NetworkPRR20E
Wikipedia pathwaysPRR20E
Orthology - Evolution
OrthoDB729250
GeneTree (enSembl)ENSG00000234278
Phylogenetic Trees/Animal Genes : TreeFamPRR20E
HOVERGENP86478
HOGENOMP86478
Homologs : HomoloGenePRR20E
Homology/Alignments : Family Browser (UCSC)PRR20E
Gene fusions - Rearrangements
Tumor Fusion PortalPRR20E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR20E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR20E
dbVarPRR20E
ClinVarPRR20E
1000_GenomesPRR20E 
Exome Variant ServerPRR20E
ExAC (Exome Aggregation Consortium)ENSG00000234278
GNOMAD BrowserENSG00000234278
Genetic variants : HAPMAP729250
Genomic Variants (DGV)PRR20E [DGVbeta]
DECIPHERPRR20E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR20E 
Mutations
ICGC Data PortalPRR20E 
TCGA Data PortalPRR20E 
Broad Tumor PortalPRR20E
OASIS PortalPRR20E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR20E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR20E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR20E
DgiDB (Drug Gene Interaction Database)PRR20E
DoCM (Curated mutations)PRR20E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR20E (select a term)
intoGenPRR20E
Cancer3DPRR20E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR20E
MedgenPRR20E
Genetic Testing Registry PRR20E
NextProtP86478 [Medical]
TSGene729250
GENETestsPRR20E
Target ValidationPRR20E
Huge Navigator PRR20E [HugePedia]
snp3D : Map Gene to Disease729250
BioCentury BCIQPRR20E
ClinGenPRR20E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729250
Chemical/Pharm GKB GenePA165505473
Clinical trialPRR20E
Miscellaneous
canSAR (ICR)PRR20E (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR20E
EVEXPRR20E
GoPubMedPRR20E
iHOPPRR20E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:28:50 CET 2017

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