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PRR22 (proline rich 22)

Identity

Alias_symbol (synonym)MGC24975
Other alias-
HGNC (Hugo) PRR22
LocusID (NCBI) 163154
Atlas_Id 72271
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5782960 and ends at 5784765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DUS3L (19p13.3) / PRR22 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR22   28354
Cards
Entrez_Gene (NCBI)PRR22  163154  proline rich 22
Aliases
GeneCards (Weizmann)PRR22
Ensembl hg19 (Hinxton)ENSG00000212123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212123 [Gene_View]  chr19:5782960-5784765 [Contig_View]  PRR22 [Vega]
ICGC DataPortalENSG00000212123
TCGA cBioPortalPRR22
AceView (NCBI)PRR22
Genatlas (Paris)PRR22
WikiGenes163154
SOURCE (Princeton)PRR22
Genetics Home Reference (NIH)PRR22
Genomic and cartography
GoldenPath hg38 (UCSC)PRR22  -     chr19:5782960-5784765 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR22  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblPRR22 - 19p13.3 [CytoView hg19]  PRR22 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIPRR22 [Mapview hg19]  PRR22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC008985 BC023278 CN370733 GQ129279
RefSeq transcript (Entrez)NM_001134316 NM_153359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR22
Cluster EST : UnigeneHs.631838 [ NCBI ]
CGAP (NCI)Hs.631838
Alternative Splicing GalleryENSG00000212123
Gene ExpressionPRR22 [ NCBI-GEO ]   PRR22 [ EBI - ARRAY_EXPRESS ]   PRR22 [ SEEK ]   PRR22 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163154
GTEX Portal (Tissue expression)PRR22
Human Protein AtlasENSG00000212123-PRR22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ63
Splice isoforms : SwissVarQ8IZ63
PhosPhoSitePlusQ8IZ63
Domains : Interpro (EBI)PRR22   
Domain families : Pfam (Sanger)PRR22 (PF15776)   
Domain families : Pfam (NCBI)pfam15776   
Conserved Domain (NCBI)PRR22
DMDM Disease mutations163154
Blocks (Seattle)PRR22
SuperfamilyQ8IZ63
Human Protein Atlas [tissue]ENSG00000212123-PRR22 [tissue]
Peptide AtlasQ8IZ63
HPRD14501
IPIIPI00217896   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ63
IntAct (EBI)Q8IZ63
FunCoupENSG00000212123
BioGRIDPRR22
STRING (EMBL)PRR22
ZODIACPRR22
Ontologies - Pathways
QuickGOQ8IZ63
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR22
Atlas of Cancer Signalling NetworkPRR22
Wikipedia pathwaysPRR22
Orthology - Evolution
OrthoDB163154
GeneTree (enSembl)ENSG00000212123
Phylogenetic Trees/Animal Genes : TreeFamPRR22
HOVERGENQ8IZ63
HOGENOMQ8IZ63
Homologs : HomoloGenePRR22
Homology/Alignments : Family Browser (UCSC)PRR22
Gene fusions - Rearrangements
Tumor Fusion PortalPRR22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR22
dbVarPRR22
ClinVarPRR22
1000_GenomesPRR22 
Exome Variant ServerPRR22
ExAC (Exome Aggregation Consortium)ENSG00000212123
GNOMAD BrowserENSG00000212123
Genetic variants : HAPMAP163154
Genomic Variants (DGV)PRR22 [DGVbeta]
DECIPHERPRR22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR22 
Mutations
ICGC Data PortalPRR22 
TCGA Data PortalPRR22 
Broad Tumor PortalPRR22
OASIS PortalPRR22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR22
DgiDB (Drug Gene Interaction Database)PRR22
DoCM (Curated mutations)PRR22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR22 (select a term)
intoGenPRR22
Cancer3DPRR22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR22
MedgenPRR22
Genetic Testing Registry PRR22
NextProtQ8IZ63 [Medical]
TSGene163154
GENETestsPRR22
Target ValidationPRR22
Huge Navigator PRR22 [HugePedia]
snp3D : Map Gene to Disease163154
BioCentury BCIQPRR22
ClinGenPRR22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163154
Chemical/Pharm GKB GenePA165394215
Clinical trialPRR22
Miscellaneous
canSAR (ICR)PRR22 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR22
EVEXPRR22
GoPubMedPRR22
iHOPPRR22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:41 CET 2017

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