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PRR23A (proline rich 23A)

Identity

Other alias-
HGNC (Hugo) PRR23A
LocusID (NCBI) 729627
Atlas_Id 72272
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139003962 and ends at 139006268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR23A   37172
Cards
Entrez_Gene (NCBI)PRR23A  729627  proline rich 23A
Aliases
GeneCards (Weizmann)PRR23A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:139003962-139006268 [Contig_View]  PRR23A [Vega]
TCGA cBioPortalPRR23A
AceView (NCBI)PRR23A
Genatlas (Paris)PRR23A
WikiGenes729627
SOURCE (Princeton)PRR23A
Genetics Home Reference (NIH)PRR23A
Genomic and cartography
GoldenPath hg38 (UCSC)PRR23A  -     chr3:139003962-139006268 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR23A  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblPRR23A - 3q23 [CytoView hg19]  PRR23A - 3q23 [CytoView hg38]
Mapping of homologs : NCBIPRR23A [Mapview hg19]  PRR23A [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001134659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR23A
Cluster EST : UnigeneHs.121314 [ NCBI ]
CGAP (NCI)Hs.121314
Gene ExpressionPRR23A [ NCBI-GEO ]   PRR23A [ EBI - ARRAY_EXPRESS ]   PRR23A [ SEEK ]   PRR23A [ MEM ]
Gene Expression Viewer (FireBrowse)PRR23A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729627
GTEX Portal (Tissue expression)PRR23A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEV1
Splice isoforms : SwissVarA6NEV1
PhosPhoSitePlusA6NEV1
Domains : Interpro (EBI)PRR23   
Domain families : Pfam (Sanger)DUF2476 (PF10630)   
Domain families : Pfam (NCBI)pfam10630   
Conserved Domain (NCBI)PRR23A
DMDM Disease mutations729627
Blocks (Seattle)PRR23A
SuperfamilyA6NEV1
Peptide AtlasA6NEV1
IPIIPI00745636   
Protein Interaction databases
DIP (DOE-UCLA)A6NEV1
IntAct (EBI)A6NEV1
BioGRIDPRR23A
STRING (EMBL)PRR23A
ZODIACPRR23A
Ontologies - Pathways
QuickGOA6NEV1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR23A
Atlas of Cancer Signalling NetworkPRR23A
Wikipedia pathwaysPRR23A
Orthology - Evolution
OrthoDB729627
Phylogenetic Trees/Animal Genes : TreeFamPRR23A
HOVERGENA6NEV1
HOGENOMA6NEV1
Homologs : HomoloGenePRR23A
Homology/Alignments : Family Browser (UCSC)PRR23A
Gene fusions - Rearrangements
Tumor Fusion PortalPRR23A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR23A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR23A
dbVarPRR23A
ClinVarPRR23A
1000_GenomesPRR23A 
Exome Variant ServerPRR23A
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP729627
Genomic Variants (DGV)PRR23A [DGVbeta]
DECIPHERPRR23A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR23A 
Mutations
ICGC Data PortalPRR23A 
TCGA Data PortalPRR23A 
Broad Tumor PortalPRR23A
OASIS PortalPRR23A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR23A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR23A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR23A
DgiDB (Drug Gene Interaction Database)PRR23A
DoCM (Curated mutations)PRR23A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR23A (select a term)
intoGenPRR23A
Cancer3DPRR23A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR23A
MedgenPRR23A
Genetic Testing Registry PRR23A
NextProtA6NEV1 [Medical]
TSGene729627
GENETestsPRR23A
Target ValidationPRR23A
Huge Navigator PRR23A [HugePedia]
snp3D : Map Gene to Disease729627
BioCentury BCIQPRR23A
ClinGenPRR23A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729627
Chemical/Pharm GKB GenePA165698130
Clinical trialPRR23A
Miscellaneous
canSAR (ICR)PRR23A (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR23A
EVEXPRR23A
GoPubMedPRR23A
iHOPPRR23A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:48 CET 2017

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