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PRR23B (proline rich 23B)

Identity

Alias_symbol (synonym)FLJ46116
Other alias-
HGNC (Hugo) PRR23B
LocusID (NCBI) 389151
Atlas_Id 72273
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139019031 and ends at 139020926 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR23B   33764
Cards
Entrez_Gene (NCBI)PRR23B  389151  proline rich 23B
Aliases
GeneCards (Weizmann)PRR23B
Ensembl hg19 (Hinxton)ENSG00000184814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184814 [Gene_View]  chr3:139019031-139020926 [Contig_View]  PRR23B [Vega]
ICGC DataPortalENSG00000184814
TCGA cBioPortalPRR23B
AceView (NCBI)PRR23B
Genatlas (Paris)PRR23B
WikiGenes389151
SOURCE (Princeton)PRR23B
Genetics Home Reference (NIH)PRR23B
Genomic and cartography
GoldenPath hg38 (UCSC)PRR23B  -     chr3:139019031-139020926 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR23B  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblPRR23B - 3q23 [CytoView hg19]  PRR23B - 3q23 [CytoView hg38]
Mapping of homologs : NCBIPRR23B [Mapview hg19]  PRR23B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127998 BC137145 BC137146
RefSeq transcript (Entrez)NM_001013650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR23B
Cluster EST : UnigeneHs.531376 [ NCBI ]
CGAP (NCI)Hs.531376
Alternative Splicing GalleryENSG00000184814
Gene ExpressionPRR23B [ NCBI-GEO ]   PRR23B [ EBI - ARRAY_EXPRESS ]   PRR23B [ SEEK ]   PRR23B [ MEM ]
Gene Expression Viewer (FireBrowse)PRR23B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389151
GTEX Portal (Tissue expression)PRR23B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRT6
Splice isoforms : SwissVarQ6ZRT6
PhosPhoSitePlusQ6ZRT6
Domains : Interpro (EBI)PRR23   
Domain families : Pfam (Sanger)DUF2476 (PF10630)   
Domain families : Pfam (NCBI)pfam10630   
Conserved Domain (NCBI)PRR23B
DMDM Disease mutations389151
Blocks (Seattle)PRR23B
SuperfamilyQ6ZRT6
Human Protein AtlasENSG00000184814
Peptide AtlasQ6ZRT6
HPRD18392
IPIIPI00397979   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRT6
IntAct (EBI)Q6ZRT6
FunCoupENSG00000184814
BioGRIDPRR23B
STRING (EMBL)PRR23B
ZODIACPRR23B
Ontologies - Pathways
QuickGOQ6ZRT6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR23B
Atlas of Cancer Signalling NetworkPRR23B
Wikipedia pathwaysPRR23B
Orthology - Evolution
OrthoDB389151
GeneTree (enSembl)ENSG00000184814
Phylogenetic Trees/Animal Genes : TreeFamPRR23B
HOVERGENQ6ZRT6
HOGENOMQ6ZRT6
Homologs : HomoloGenePRR23B
Homology/Alignments : Family Browser (UCSC)PRR23B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR23B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR23B
dbVarPRR23B
ClinVarPRR23B
1000_GenomesPRR23B 
Exome Variant ServerPRR23B
ExAC (Exome Aggregation Consortium)PRR23B (select the gene name)
Genetic variants : HAPMAP389151
Genomic Variants (DGV)PRR23B [DGVbeta]
DECIPHERPRR23B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR23B 
Mutations
ICGC Data PortalPRR23B 
TCGA Data PortalPRR23B 
Broad Tumor PortalPRR23B
OASIS PortalPRR23B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR23B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR23B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR23B
DgiDB (Drug Gene Interaction Database)PRR23B
DoCM (Curated mutations)PRR23B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR23B (select a term)
intoGenPRR23B
Cancer3DPRR23B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR23B
Genetic Testing Registry PRR23B
NextProtQ6ZRT6 [Medical]
TSGene389151
GENETestsPRR23B
Target ValidationPRR23B
Huge Navigator PRR23B [HugePedia]
snp3D : Map Gene to Disease389151
BioCentury BCIQPRR23B
ClinGenPRR23B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389151
Chemical/Pharm GKB GenePA165698144
Clinical trialPRR23B
Miscellaneous
canSAR (ICR)PRR23B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR23B
EVEXPRR23B
GoPubMedPRR23B
iHOPPRR23B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:24 CEST 2017

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