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PRR23C (proline rich 23C)

Identity

Alias_symbol (synonym)FLJ46210
Other alias-
HGNC (Hugo) PRR23C
LocusID (NCBI) 389152
Atlas_Id 72274
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 138760944 and ends at 138763734 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR23C   37173
Cards
Entrez_Gene (NCBI)PRR23C  389152  proline rich 23C
Aliases
GeneCards (Weizmann)PRR23C
Ensembl hg19 (Hinxton)ENSG00000233701 [Gene_View]  chr3:138760944-138763734 [Contig_View]  PRR23C [Vega]
Ensembl hg38 (Hinxton)ENSG00000233701 [Gene_View]  chr3:138760944-138763734 [Contig_View]  PRR23C [Vega]
ICGC DataPortalENSG00000233701
TCGA cBioPortalPRR23C
AceView (NCBI)PRR23C
Genatlas (Paris)PRR23C
WikiGenes389152
SOURCE (Princeton)PRR23C
Genetics Home Reference (NIH)PRR23C
Genomic and cartography
GoldenPath hg19 (UCSC)PRR23C  -     chr3:138760944-138763734 -  3q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR23C  -     3q23   [Description]    (hg38-Dec_2013)
EnsemblPRR23C - 3q23 [CytoView hg19]  PRR23C - 3q23 [CytoView hg38]
Mapping of homologs : NCBIPRR23C [Mapview hg19]  PRR23C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128089
RefSeq transcript (Entrez)NM_001004315 NM_001134657
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)PRR23C
Cluster EST : UnigeneHs.531377 [ NCBI ]
CGAP (NCI)Hs.531377
Alternative Splicing GalleryENSG00000233701
Gene ExpressionPRR23C [ NCBI-GEO ]   PRR23C [ EBI - ARRAY_EXPRESS ]   PRR23C [ SEEK ]   PRR23C [ MEM ]
Gene Expression Viewer (FireBrowse)PRR23C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389152
GTEX Portal (Tissue expression)PRR23C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRP0
Splice isoforms : SwissVarQ6ZRP0
PhosPhoSitePlusQ6ZRP0
Domains : Interpro (EBI)UPF0572   
Domain families : Pfam (Sanger)DUF2476 (PF10630)   
Domain families : Pfam (NCBI)pfam10630   
Conserved Domain (NCBI)PRR23C
DMDM Disease mutations389152
Blocks (Seattle)PRR23C
SuperfamilyQ6ZRP0
Human Protein AtlasENSG00000233701
Peptide AtlasQ6ZRP0
HPRD13526
IPIIPI00397980   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRP0
IntAct (EBI)Q6ZRP0
FunCoupENSG00000233701
BioGRIDPRR23C
STRING (EMBL)PRR23C
ZODIACPRR23C
Ontologies - Pathways
QuickGOQ6ZRP0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR23C
Atlas of Cancer Signalling NetworkPRR23C
Wikipedia pathwaysPRR23C
Orthology - Evolution
OrthoDB389152
GeneTree (enSembl)ENSG00000233701
Phylogenetic Trees/Animal Genes : TreeFamPRR23C
HOVERGENQ6ZRP0
HOGENOMQ6ZRP0
Homologs : HomoloGenePRR23C
Homology/Alignments : Family Browser (UCSC)PRR23C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR23C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR23C
dbVarPRR23C
ClinVarPRR23C
1000_GenomesPRR23C 
Exome Variant ServerPRR23C
ExAC (Exome Aggregation Consortium)PRR23C (select the gene name)
Genetic variants : HAPMAP389152
Genomic Variants (DGV)PRR23C [DGVbeta]
DECIPHER (Syndromes)3:138760944-138763734  ENSG00000233701
CONAN: Copy Number AnalysisPRR23C 
Mutations
ICGC Data PortalPRR23C 
TCGA Data PortalPRR23C 
Broad Tumor PortalPRR23C
OASIS PortalPRR23C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR23C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR23C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR23C
DgiDB (Drug Gene Interaction Database)PRR23C
DoCM (Curated mutations)PRR23C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR23C (select a term)
intoGenPRR23C
Cancer3DPRR23C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR23C
Genetic Testing Registry PRR23C
NextProtQ6ZRP0 [Medical]
TSGene389152
GENETestsPRR23C
Huge Navigator PRR23C [HugePedia]
snp3D : Map Gene to Disease389152
BioCentury BCIQPRR23C
ClinGenPRR23C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389152
Chemical/Pharm GKB GenePA165698175
Clinical trialPRR23C
Miscellaneous
canSAR (ICR)PRR23C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR23C
EVEXPRR23C
GoPubMedPRR23C
iHOPPRR23C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:51 CET 2017

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