Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRR23D1 (proline rich 23 domain containing 1)

Identity

Other alias-
HGNC (Hugo) PRR23D1
LocusID (NCBI) 100131608
Atlas_Id 72275
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7539627 and ends at 7542450 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR23D1   49420
Cards
Entrez_Gene (NCBI)PRR23D1  100131608  proline rich 23 domain containing 1
Aliases
GeneCards (Weizmann)PRR23D1
Ensembl hg19 (Hinxton)ENSG00000255251 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255251 [Gene_View]  chr8:7539627-7542450 [Contig_View]  PRR23D1 [Vega]
ICGC DataPortalENSG00000255251
TCGA cBioPortalPRR23D1
AceView (NCBI)PRR23D1
Genatlas (Paris)PRR23D1
WikiGenes100131608
SOURCE (Princeton)PRR23D1
Genetics Home Reference (NIH)PRR23D1
Genomic and cartography
GoldenPath hg38 (UCSC)PRR23D1  -     chr8:7539627-7542450 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR23D1  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblPRR23D1 - 8p23.1 [CytoView hg19]  PRR23D1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIPRR23D1 [Mapview hg19]  PRR23D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001282479
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187570
Consensus coding sequences : CCDS (NCBI)PRR23D1
Alternative Splicing GalleryENSG00000255251
Gene ExpressionPRR23D1 [ NCBI-GEO ]   PRR23D1 [ EBI - ARRAY_EXPRESS ]   PRR23D1 [ SEEK ]   PRR23D1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR23D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131608
GTEX Portal (Tissue expression)PRR23D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PI22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PI22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PI22
Splice isoforms : SwissVarE9PI22
PhosPhoSitePlusE9PI22
Domains : Interpro (EBI)PRR23   
Domain families : Pfam (Sanger)DUF2476 (PF10630)   
Domain families : Pfam (NCBI)pfam10630   
Conserved Domain (NCBI)PRR23D1
DMDM Disease mutations100131608
Blocks (Seattle)PRR23D1
SuperfamilyE9PI22
Human Protein AtlasENSG00000255251
Peptide AtlasE9PI22
IPIIPI00980745   
Protein Interaction databases
DIP (DOE-UCLA)E9PI22
IntAct (EBI)E9PI22
FunCoupENSG00000255251
BioGRIDPRR23D1
STRING (EMBL)PRR23D1
ZODIACPRR23D1
Ontologies - Pathways
QuickGOE9PI22
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR23D1
Atlas of Cancer Signalling NetworkPRR23D1
Wikipedia pathwaysPRR23D1
Orthology - Evolution
OrthoDB100131608
GeneTree (enSembl)ENSG00000255251
Phylogenetic Trees/Animal Genes : TreeFamPRR23D1
HOVERGENE9PI22
HOGENOME9PI22
Homologs : HomoloGenePRR23D1
Homology/Alignments : Family Browser (UCSC)PRR23D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR23D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR23D1
dbVarPRR23D1
ClinVarPRR23D1
1000_GenomesPRR23D1 
Exome Variant ServerPRR23D1
ExAC (Exome Aggregation Consortium)PRR23D1 (select the gene name)
Genetic variants : HAPMAP100131608
Genomic Variants (DGV)PRR23D1 [DGVbeta]
DECIPHERPRR23D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR23D1 
Mutations
ICGC Data PortalPRR23D1 
TCGA Data PortalPRR23D1 
Broad Tumor PortalPRR23D1
OASIS PortalPRR23D1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR23D1
BioMutasearch PRR23D1
DgiDB (Drug Gene Interaction Database)PRR23D1
DoCM (Curated mutations)PRR23D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR23D1 (select a term)
intoGenPRR23D1
Cancer3DPRR23D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR23D1
Genetic Testing Registry PRR23D1
NextProtE9PI22 [Medical]
TSGene100131608
GENETestsPRR23D1
Target ValidationPRR23D1
Huge Navigator PRR23D1 [HugePedia]
snp3D : Map Gene to Disease100131608
BioCentury BCIQPRR23D1
ClinGenPRR23D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131608
Chemical/Pharm GKB GenePA166123728
Clinical trialPRR23D1
Miscellaneous
canSAR (ICR)PRR23D1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR23D1
EVEXPRR23D1
GoPubMedPRR23D1
iHOPPRR23D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:32 CEST 2017

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