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PRR23D2 (proline rich 23 domain containing 2)

Identity

Other alias-
HGNC (Hugo) PRR23D2
LocusID (NCBI) 100133251
Atlas_Id 72276
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7539628 and ends at 7542450 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR23D2   49396
Cards
Entrez_Gene (NCBI)PRR23D2  100133251  proline rich 23 domain containing 2
Aliases
GeneCards (Weizmann)PRR23D2
Ensembl hg19 (Hinxton)ENSG00000255378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255378 [Gene_View]  chr8:7539628-7542450 [Contig_View]  PRR23D2 [Vega]
ICGC DataPortalENSG00000255378
TCGA cBioPortalPRR23D2
AceView (NCBI)PRR23D2
Genatlas (Paris)PRR23D2
WikiGenes100133251
SOURCE (Princeton)PRR23D2
Genetics Home Reference (NIH)PRR23D2
Genomic and cartography
GoldenPath hg38 (UCSC)PRR23D2  -     chr8:7539628-7542450 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR23D2  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblPRR23D2 - 8p23.1 [CytoView hg19]  PRR23D2 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIPRR23D2 [Mapview hg19]  PRR23D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CN273434
RefSeq transcript (Entrez)NM_001282478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR23D2
Cluster EST : UnigeneHs.520875 [ NCBI ]
CGAP (NCI)Hs.520875
Alternative Splicing GalleryENSG00000255378
Gene ExpressionPRR23D2 [ NCBI-GEO ]   PRR23D2 [ EBI - ARRAY_EXPRESS ]   PRR23D2 [ SEEK ]   PRR23D2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR23D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133251
GTEX Portal (Tissue expression)PRR23D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMB1
Splice isoforms : SwissVarP0DMB1
PhosPhoSitePlusP0DMB1
Domains : Interpro (EBI)PRR23   
Domain families : Pfam (Sanger)DUF2476 (PF10630)   
Domain families : Pfam (NCBI)pfam10630   
Conserved Domain (NCBI)PRR23D2
DMDM Disease mutations100133251
Blocks (Seattle)PRR23D2
SuperfamilyP0DMB1
Human Protein AtlasENSG00000255378
Peptide AtlasP0DMB1
Protein Interaction databases
DIP (DOE-UCLA)P0DMB1
IntAct (EBI)P0DMB1
FunCoupENSG00000255378
BioGRIDPRR23D2
STRING (EMBL)PRR23D2
ZODIACPRR23D2
Ontologies - Pathways
QuickGOP0DMB1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR23D2
Atlas of Cancer Signalling NetworkPRR23D2
Wikipedia pathwaysPRR23D2
Orthology - Evolution
OrthoDB100133251
GeneTree (enSembl)ENSG00000255378
Phylogenetic Trees/Animal Genes : TreeFamPRR23D2
HOVERGENP0DMB1
HOGENOMP0DMB1
Homologs : HomoloGenePRR23D2
Homology/Alignments : Family Browser (UCSC)PRR23D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR23D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR23D2
dbVarPRR23D2
ClinVarPRR23D2
1000_GenomesPRR23D2 
Exome Variant ServerPRR23D2
ExAC (Exome Aggregation Consortium)PRR23D2 (select the gene name)
Genetic variants : HAPMAP100133251
Genomic Variants (DGV)PRR23D2 [DGVbeta]
DECIPHERPRR23D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR23D2 
Mutations
ICGC Data PortalPRR23D2 
TCGA Data PortalPRR23D2 
Broad Tumor PortalPRR23D2
OASIS PortalPRR23D2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR23D2
BioMutasearch PRR23D2
DgiDB (Drug Gene Interaction Database)PRR23D2
DoCM (Curated mutations)PRR23D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR23D2 (select a term)
intoGenPRR23D2
Cancer3DPRR23D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR23D2
Genetic Testing Registry PRR23D2
NextProtP0DMB1 [Medical]
TSGene100133251
GENETestsPRR23D2
Target ValidationPRR23D2
Huge Navigator PRR23D2 [HugePedia]
snp3D : Map Gene to Disease100133251
BioCentury BCIQPRR23D2
ClinGenPRR23D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133251
Chemical/Pharm GKB GenePA166123729
Clinical trialPRR23D2
Miscellaneous
canSAR (ICR)PRR23D2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR23D2
EVEXPRR23D2
GoPubMedPRR23D2
iHOPPRR23D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:24 CEST 2017

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