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PRR25 (proline rich 25)

Identity

Alias_symbol (synonym)gs64
Other alias
HGNC (Hugo) PRR25
LocusID (NCBI) 388199
Atlas_Id 72277
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 805443 and ends at 813861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR25   37230
Cards
Entrez_Gene (NCBI)PRR25  388199  proline rich 25
Aliasesgs64
GeneCards (Weizmann)PRR25
Ensembl hg19 (Hinxton)ENSG00000167945 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167945 [Gene_View]  chr16:805443-813861 [Contig_View]  PRR25 [Vega]
ICGC DataPortalENSG00000167945
TCGA cBioPortalPRR25
AceView (NCBI)PRR25
Genatlas (Paris)PRR25
WikiGenes388199
SOURCE (Princeton)PRR25
Genetics Home Reference (NIH)PRR25
Genomic and cartography
GoldenPath hg38 (UCSC)PRR25  -     chr16:805443-813861 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR25  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPRR25 - 16p13.3 [CytoView hg19]  PRR25 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPRR25 [Mapview hg19]  PRR25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156145 BC156984
RefSeq transcript (Entrez)NM_001013638
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR25
Cluster EST : UnigeneHs.528461 [ NCBI ]
CGAP (NCI)Hs.528461
Alternative Splicing GalleryENSG00000167945
Gene ExpressionPRR25 [ NCBI-GEO ]   PRR25 [ EBI - ARRAY_EXPRESS ]   PRR25 [ SEEK ]   PRR25 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388199
GTEX Portal (Tissue expression)PRR25
Human Protein AtlasENSG00000167945-PRR25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S07
Splice isoforms : SwissVarQ96S07
PhosPhoSitePlusQ96S07
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR25
DMDM Disease mutations388199
Blocks (Seattle)PRR25
SuperfamilyQ96S07
Human Protein Atlas [tissue]ENSG00000167945-PRR25 [tissue]
Peptide AtlasQ96S07
HPRD18379
IPIIPI00290256   
Protein Interaction databases
DIP (DOE-UCLA)Q96S07
IntAct (EBI)Q96S07
FunCoupENSG00000167945
BioGRIDPRR25
STRING (EMBL)PRR25
ZODIACPRR25
Ontologies - Pathways
QuickGOQ96S07
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR25
Atlas of Cancer Signalling NetworkPRR25
Wikipedia pathwaysPRR25
Orthology - Evolution
OrthoDB388199
GeneTree (enSembl)ENSG00000167945
Phylogenetic Trees/Animal Genes : TreeFamPRR25
HOVERGENQ96S07
HOGENOMQ96S07
Homologs : HomoloGenePRR25
Homology/Alignments : Family Browser (UCSC)PRR25
Gene fusions - Rearrangements
Fusion: Tumor Portal PRR25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR25
dbVarPRR25
ClinVarPRR25
1000_GenomesPRR25 
Exome Variant ServerPRR25
ExAC (Exome Aggregation Consortium)ENSG00000167945
GNOMAD BrowserENSG00000167945
Genetic variants : HAPMAP388199
Genomic Variants (DGV)PRR25 [DGVbeta]
DECIPHERPRR25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR25 
Mutations
ICGC Data PortalPRR25 
TCGA Data PortalPRR25 
Broad Tumor PortalPRR25
OASIS PortalPRR25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR25
DgiDB (Drug Gene Interaction Database)PRR25
DoCM (Curated mutations)PRR25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR25 (select a term)
intoGenPRR25
Cancer3DPRR25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR25
Genetic Testing Registry PRR25
NextProtQ96S07 [Medical]
TSGene388199
GENETestsPRR25
Target ValidationPRR25
Huge Navigator PRR25 [HugePedia]
snp3D : Map Gene to Disease388199
BioCentury BCIQPRR25
ClinGenPRR25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388199
Chemical/Pharm GKB GenePA165450599
Clinical trialPRR25
Miscellaneous
canSAR (ICR)PRR25 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR25
EVEXPRR25
GoPubMedPRR25
iHOPPRR25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:23:45 CET 2017

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