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PRR27 (proline rich 27)

Identity

Alias_namesC4orf40
chromosome 4 open reading frame 40
Other alias
HGNC (Hugo) PRR27
LocusID (NCBI) 401137
Atlas_Id 72278
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70154187 and ends at 70166609 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF19B (1p35.1) / PRR27 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR27   33193
Cards
Entrez_Gene (NCBI)PRR27  401137  proline rich 27
AliasesC4orf40
GeneCards (Weizmann)PRR27
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:70154187-70166609 [Contig_View]  PRR27 [Vega]
TCGA cBioPortalPRR27
AceView (NCBI)PRR27
Genatlas (Paris)PRR27
WikiGenes401137
SOURCE (Princeton)PRR27
Genetics Home Reference (NIH)PRR27
Genomic and cartography
GoldenPath hg38 (UCSC)PRR27  -     chr4:70154187-70166609 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR27  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblPRR27 - 4q13.3 [CytoView hg19]  PRR27 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIPRR27 [Mapview hg19]  PRR27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AM393471 BC146696 BX484937 BX485867 BX640892
RefSeq transcript (Entrez)NM_214711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR27
Cluster EST : UnigeneHs.518795 [ NCBI ]
CGAP (NCI)Hs.518795
Gene ExpressionPRR27 [ NCBI-GEO ]   PRR27 [ EBI - ARRAY_EXPRESS ]   PRR27 [ SEEK ]   PRR27 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401137
GTEX Portal (Tissue expression)PRR27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6MZM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6MZM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6MZM9
Splice isoforms : SwissVarQ6MZM9
PhosPhoSitePlusQ6MZM9
Domains : Interpro (EBI)PRR27   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR27
DMDM Disease mutations401137
Blocks (Seattle)PRR27
SuperfamilyQ6MZM9
Peptide AtlasQ6MZM9
HPRD14222
IPIIPI00414884   IPI00964553   IPI00964836   
Protein Interaction databases
DIP (DOE-UCLA)Q6MZM9
IntAct (EBI)Q6MZM9
BioGRIDPRR27
STRING (EMBL)PRR27
ZODIACPRR27
Ontologies - Pathways
QuickGOQ6MZM9
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkPRR27
Atlas of Cancer Signalling NetworkPRR27
Wikipedia pathwaysPRR27
Orthology - Evolution
OrthoDB401137
Phylogenetic Trees/Animal Genes : TreeFamPRR27
HOVERGENQ6MZM9
HOGENOMQ6MZM9
Homologs : HomoloGenePRR27
Homology/Alignments : Family Browser (UCSC)PRR27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR27
dbVarPRR27
ClinVarPRR27
1000_GenomesPRR27 
Exome Variant ServerPRR27
ExAC (Exome Aggregation Consortium)PRR27 (select the gene name)
Genetic variants : HAPMAP401137
Genomic Variants (DGV)PRR27 [DGVbeta]
DECIPHERPRR27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR27 
Mutations
ICGC Data PortalPRR27 
TCGA Data PortalPRR27 
Broad Tumor PortalPRR27
OASIS PortalPRR27 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR27
BioMutasearch PRR27
DgiDB (Drug Gene Interaction Database)PRR27
DoCM (Curated mutations)PRR27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR27 (select a term)
intoGenPRR27
Cancer3DPRR27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR27
Genetic Testing Registry PRR27
NextProtQ6MZM9 [Medical]
TSGene401137
GENETestsPRR27
Target ValidationPRR27
Huge Navigator PRR27 [HugePedia]
snp3D : Map Gene to Disease401137
BioCentury BCIQPRR27
ClinGenPRR27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401137
Chemical/Pharm GKB GenePA162379834
Clinical trialPRR27
Miscellaneous
canSAR (ICR)PRR27 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR27
EVEXPRR27
GoPubMedPRR27
iHOPPRR27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:33 CEST 2017

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