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PRR29 (proline rich 29)

Identity

Alias_namesC17orf72
chromosome 17 open reading frame 72
Alias_symbol (synonym)FLJ11724
DKFZp761M2312
Other alias
HGNC (Hugo) PRR29
LocusID (NCBI) 92340
Atlas_Id 72279
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 62075711 and ends at 62081644 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRR29 (17q23.3) / IL15 (4q31.21)TNS1 (2q35) / PRR29 (17q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR29   25673
Cards
Entrez_Gene (NCBI)PRR29  92340  proline rich 29
AliasesC17orf72
GeneCards (Weizmann)PRR29
Ensembl hg19 (Hinxton)ENSG00000224383 [Gene_View]  chr17:62075711-62081644 [Contig_View]  PRR29 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224383 [Gene_View]  chr17:62075711-62081644 [Contig_View]  PRR29 [Vega]
ICGC DataPortalENSG00000224383
TCGA cBioPortalPRR29
AceView (NCBI)PRR29
Genatlas (Paris)PRR29
WikiGenes92340
SOURCE (Princeton)PRR29
Genetics Home Reference (NIH)PRR29
Genomic and cartography
GoldenPath hg19 (UCSC)PRR29  -     chr17:62075711-62081644 +  17q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR29  -     17q23.3   [Description]    (hg38-Dec_2013)
EnsemblPRR29 - 17q23.3 [CytoView hg19]  PRR29 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBIPRR29 [Mapview hg19]  PRR29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021786 AK294360 AK302960 AK304254 AL161972
RefSeq transcript (Entrez)NM_001164257 NM_001191029 NM_001191030 NM_001191031
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)PRR29
Cluster EST : UnigeneHs.708161 [ NCBI ]
CGAP (NCI)Hs.708161
Alternative Splicing GalleryENSG00000224383
Gene ExpressionPRR29 [ NCBI-GEO ]   PRR29 [ EBI - ARRAY_EXPRESS ]   PRR29 [ SEEK ]   PRR29 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92340
GTEX Portal (Tissue expression)PRR29
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7W0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7W0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7W0
Splice isoforms : SwissVarP0C7W0
PhosPhoSitePlusP0C7W0
Domains : Interpro (EBI)DUF4587   
Domain families : Pfam (Sanger)DUF4587 (PF15248)   
Domain families : Pfam (NCBI)pfam15248   
Conserved Domain (NCBI)PRR29
DMDM Disease mutations92340
Blocks (Seattle)PRR29
SuperfamilyP0C7W0
Human Protein AtlasENSG00000224383
Peptide AtlasP0C7W0
IPIIPI00784255   IPI00908816   IPI00976094   IPI00790300   
Protein Interaction databases
DIP (DOE-UCLA)P0C7W0
IntAct (EBI)P0C7W0
FunCoupENSG00000224383
BioGRIDPRR29
STRING (EMBL)PRR29
ZODIACPRR29
Ontologies - Pathways
QuickGOP0C7W0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR29
Atlas of Cancer Signalling NetworkPRR29
Wikipedia pathwaysPRR29
Orthology - Evolution
OrthoDB92340
GeneTree (enSembl)ENSG00000224383
Phylogenetic Trees/Animal Genes : TreeFamPRR29
HOVERGENP0C7W0
HOGENOMP0C7W0
Homologs : HomoloGenePRR29
Homology/Alignments : Family Browser (UCSC)PRR29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR29
dbVarPRR29
ClinVarPRR29
1000_GenomesPRR29 
Exome Variant ServerPRR29
ExAC (Exome Aggregation Consortium)PRR29 (select the gene name)
Genetic variants : HAPMAP92340
Genomic Variants (DGV)PRR29 [DGVbeta]
DECIPHER (Syndromes)17:62075711-62081644  ENSG00000224383
CONAN: Copy Number AnalysisPRR29 
Mutations
ICGC Data PortalPRR29 
TCGA Data PortalPRR29 
Broad Tumor PortalPRR29
OASIS PortalPRR29 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR29
BioMutasearch PRR29
DgiDB (Drug Gene Interaction Database)PRR29
DoCM (Curated mutations)PRR29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR29 (select a term)
intoGenPRR29
Cancer3DPRR29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR29
Genetic Testing Registry PRR29
NextProtP0C7W0 [Medical]
TSGene92340
GENETestsPRR29
Huge Navigator PRR29 [HugePedia]
snp3D : Map Gene to Disease92340
BioCentury BCIQPRR29
ClinGenPRR29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92340
Chemical/Pharm GKB GenePA142672220
Clinical trialPRR29
Miscellaneous
canSAR (ICR)PRR29 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR29
EVEXPRR29
GoPubMedPRR29
iHOPPRR29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:52 CET 2017

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