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PRR3 (proline rich 3)

Identity

Alias_namesproline-rich polpeptide 3
Alias_symbol (synonym)CAT56
Em:AB014077.1
Em:AB023052.2
Other alias
HGNC (Hugo) PRR3
LocusID (NCBI) 80742
Atlas_Id 72280
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30556709 and ends at 30564696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR3   21149
Cards
Entrez_Gene (NCBI)PRR3  80742  proline rich 3
AliasesCAT56
GeneCards (Weizmann)PRR3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:30556709-30564696 [Contig_View]  PRR3 [Vega]
TCGA cBioPortalPRR3
AceView (NCBI)PRR3
Genatlas (Paris)PRR3
WikiGenes80742
SOURCE (Princeton)PRR3
Genetics Home Reference (NIH)PRR3
Genomic and cartography
GoldenPath hg38 (UCSC)PRR3  -     chr6:30556709-30564696 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR3  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblPRR3 - 6p21.33 [CytoView hg19]  PRR3 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIPRR3 [Mapview hg19]  PRR3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074531 AK131382 AK298621 AK316586 BC126455
RefSeq transcript (Entrez)NM_001077497 NM_025263
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)PRR3
Cluster EST : UnigeneHs.651434 [ NCBI ]
CGAP (NCI)Hs.651434
Gene ExpressionPRR3 [ NCBI-GEO ]   PRR3 [ EBI - ARRAY_EXPRESS ]   PRR3 [ SEEK ]   PRR3 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80742
GTEX Portal (Tissue expression)PRR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP79522   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP79522  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP79522
Splice isoforms : SwissVarP79522
PhosPhoSitePlusP79522
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)PRR3
DMDM Disease mutations80742
Blocks (Seattle)PRR3
SuperfamilyP79522
Peptide AtlasP79522
HPRD17915
IPIIPI01009126   IPI00514674   IPI00514308   
Protein Interaction databases
DIP (DOE-UCLA)P79522
IntAct (EBI)P79522
BioGRIDPRR3
STRING (EMBL)PRR3
ZODIACPRR3
Ontologies - Pathways
QuickGOP79522
Ontology : AmiGORNA binding  protein binding  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  metal ion binding  
NDEx NetworkPRR3
Atlas of Cancer Signalling NetworkPRR3
Wikipedia pathwaysPRR3
Orthology - Evolution
OrthoDB80742
Phylogenetic Trees/Animal Genes : TreeFamPRR3
HOVERGENP79522
HOGENOMP79522
Homologs : HomoloGenePRR3
Homology/Alignments : Family Browser (UCSC)PRR3
Gene fusions - Rearrangements
Fusion : QuiverPRR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR3
dbVarPRR3
ClinVarPRR3
1000_GenomesPRR3 
Exome Variant ServerPRR3
Varsome BrowserPRR3
Genetic variants : HAPMAP80742
Genomic Variants (DGV)PRR3 [DGVbeta]
DECIPHERPRR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR3 
Mutations
ICGC Data PortalPRR3 
TCGA Data PortalPRR3 
Broad Tumor PortalPRR3
OASIS PortalPRR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR3
DgiDB (Drug Gene Interaction Database)PRR3
DoCM (Curated mutations)PRR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR3 (select a term)
intoGenPRR3
Cancer3DPRR3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR3
MedgenPRR3
Genetic Testing Registry PRR3
NextProtP79522 [Medical]
TSGene80742
GENETestsPRR3
Target ValidationPRR3
Huge Navigator PRR3 [HugePedia]
snp3D : Map Gene to Disease80742
BioCentury BCIQPRR3
ClinGenPRR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80742
Chemical/Pharm GKB GenePA134950097
Clinical trialPRR3
Miscellaneous
canSAR (ICR)PRR3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR3
EVEXPRR3
GoPubMedPRR3
iHOPPRR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:25:18 CEST 2018

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