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PRR30 (proline rich 30)

Identity

Alias_namesC2orf53
chromosome 2 open reading frame 53
Alias_symbol (synonym)MGC44505
Other alias
HGNC (Hugo) PRR30
LocusID (NCBI) 339779
Atlas_Id 72281
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27136847 and ends at 27139464 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR30   28677
Cards
Entrez_Gene (NCBI)PRR30  339779  proline rich 30
AliasesC2orf53
GeneCards (Weizmann)PRR30
Ensembl hg19 (Hinxton)ENSG00000186143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186143 [Gene_View]  chr2:27136847-27139464 [Contig_View]  PRR30 [Vega]
ICGC DataPortalENSG00000186143
TCGA cBioPortalPRR30
AceView (NCBI)PRR30
Genatlas (Paris)PRR30
WikiGenes339779
SOURCE (Princeton)PRR30
Genetics Home Reference (NIH)PRR30
Genomic and cartography
GoldenPath hg38 (UCSC)PRR30  -     chr2:27136847-27139464 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR30  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblPRR30 - 2p23.3 [CytoView hg19]  PRR30 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIPRR30 [Mapview hg19]  PRR30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA812952 BC045671 BX118458 DB022743 DB052016
RefSeq transcript (Entrez)NM_178553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR30
Cluster EST : UnigeneHs.136555 [ NCBI ]
CGAP (NCI)Hs.136555
Alternative Splicing GalleryENSG00000186143
Gene ExpressionPRR30 [ NCBI-GEO ]   PRR30 [ EBI - ARRAY_EXPRESS ]   PRR30 [ SEEK ]   PRR30 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339779
GTEX Portal (Tissue expression)PRR30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53SZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53SZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53SZ7
Splice isoforms : SwissVarQ53SZ7
PhosPhoSitePlusQ53SZ7
Domains : Interpro (EBI)DUF4679   
Domain families : Pfam (Sanger)DUF4679 (PF15728)   
Domain families : Pfam (NCBI)pfam15728   
Conserved Domain (NCBI)PRR30
DMDM Disease mutations339779
Blocks (Seattle)PRR30
SuperfamilyQ53SZ7
Human Protein AtlasENSG00000186143
Peptide AtlasQ53SZ7
HPRD14633
IPIIPI00328712   IPI00867641   
Protein Interaction databases
DIP (DOE-UCLA)Q53SZ7
IntAct (EBI)Q53SZ7
FunCoupENSG00000186143
BioGRIDPRR30
STRING (EMBL)PRR30
ZODIACPRR30
Ontologies - Pathways
QuickGOQ53SZ7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR30
Atlas of Cancer Signalling NetworkPRR30
Wikipedia pathwaysPRR30
Orthology - Evolution
OrthoDB339779
GeneTree (enSembl)ENSG00000186143
Phylogenetic Trees/Animal Genes : TreeFamPRR30
HOVERGENQ53SZ7
HOGENOMQ53SZ7
Homologs : HomoloGenePRR30
Homology/Alignments : Family Browser (UCSC)PRR30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR30
dbVarPRR30
ClinVarPRR30
1000_GenomesPRR30 
Exome Variant ServerPRR30
ExAC (Exome Aggregation Consortium)PRR30 (select the gene name)
Genetic variants : HAPMAP339779
Genomic Variants (DGV)PRR30 [DGVbeta]
DECIPHERPRR30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR30 
Mutations
ICGC Data PortalPRR30 
TCGA Data PortalPRR30 
Broad Tumor PortalPRR30
OASIS PortalPRR30 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR30
BioMutasearch PRR30
DgiDB (Drug Gene Interaction Database)PRR30
DoCM (Curated mutations)PRR30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR30 (select a term)
intoGenPRR30
Cancer3DPRR30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR30
Genetic Testing Registry PRR30
NextProtQ53SZ7 [Medical]
TSGene339779
GENETestsPRR30
Target ValidationPRR30
Huge Navigator PRR30 [HugePedia]
snp3D : Map Gene to Disease339779
BioCentury BCIQPRR30
ClinGenPRR30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339779
Chemical/Pharm GKB GenePA162379215
Clinical trialPRR30
Miscellaneous
canSAR (ICR)PRR30 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR30
EVEXPRR30
GoPubMedPRR30
iHOPPRR30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:37:34 CEST 2017

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