Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRR34 (proline rich 34)

Identity

Alias_namesC22orf26
chromosome 22 open reading frame 26
Alias_symbol (synonym)FLJ10945
Other alias
HGNC (Hugo) PRR34
LocusID (NCBI) 55267
Atlas_Id 72283
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 46050459 and ends at 46054144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR34   25606
Cards
Entrez_Gene (NCBI)PRR34  55267  proline rich 34
AliasesC22orf26
GeneCards (Weizmann)PRR34
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:46050459-46054144 [Contig_View]  PRR34 [Vega]
TCGA cBioPortalPRR34
AceView (NCBI)PRR34
Genatlas (Paris)PRR34
WikiGenes55267
SOURCE (Princeton)PRR34
Genetics Home Reference (NIH)PRR34
Genomic and cartography
GoldenPath hg38 (UCSC)PRR34  -     chr22:46050459-46054144 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR34  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblPRR34 - 22q13.31 [CytoView hg19]  PRR34 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIPRR34 [Mapview hg19]  PRR34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001807 AK096201 AU134173 BC152896 BC156803
RefSeq transcript (Entrez)NM_018280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR34
Cluster EST : UnigeneHs.567529 [ NCBI ]
CGAP (NCI)Hs.567529
Gene ExpressionPRR34 [ NCBI-GEO ]   PRR34 [ EBI - ARRAY_EXPRESS ]   PRR34 [ SEEK ]   PRR34 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55267
GTEX Portal (Tissue expression)PRR34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV39
Splice isoforms : SwissVarQ9NV39
PhosPhoSitePlusQ9NV39
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR34
DMDM Disease mutations55267
Blocks (Seattle)PRR34
SuperfamilyQ9NV39
Peptide AtlasQ9NV39
HPRD07717
IPIIPI00019484   IPI00982799   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV39
IntAct (EBI)Q9NV39
BioGRIDPRR34
STRING (EMBL)PRR34
ZODIACPRR34
Ontologies - Pathways
QuickGOQ9NV39
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR34
Atlas of Cancer Signalling NetworkPRR34
Wikipedia pathwaysPRR34
Orthology - Evolution
OrthoDB55267
Phylogenetic Trees/Animal Genes : TreeFamPRR34
HOVERGENQ9NV39
HOGENOMQ9NV39
Homologs : HomoloGenePRR34
Homology/Alignments : Family Browser (UCSC)PRR34
Gene fusions - Rearrangements
Tumor Fusion PortalPRR34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR34
dbVarPRR34
ClinVarPRR34
1000_GenomesPRR34 
Exome Variant ServerPRR34
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55267
Genomic Variants (DGV)PRR34 [DGVbeta]
DECIPHERPRR34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR34 
Mutations
ICGC Data PortalPRR34 
TCGA Data PortalPRR34 
Broad Tumor PortalPRR34
OASIS PortalPRR34 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR34
BioMutasearch PRR34
DgiDB (Drug Gene Interaction Database)PRR34
DoCM (Curated mutations)PRR34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR34 (select a term)
intoGenPRR34
Cancer3DPRR34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR34
MedgenPRR34
Genetic Testing Registry PRR34
NextProtQ9NV39 [Medical]
TSGene55267
GENETestsPRR34
Target ValidationPRR34
Huge Navigator PRR34 [HugePedia]
snp3D : Map Gene to Disease55267
BioCentury BCIQPRR34
ClinGenPRR34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55267
Chemical/Pharm GKB GenePA145149369
Clinical trialPRR34
Miscellaneous
canSAR (ICR)PRR34 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR34
EVEXPRR34
GoPubMedPRR34
iHOPPRR34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.