Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRR35 (proline rich 35)

Identity

Alias_namesC16orf11
chromosome 16 open reading frame 11
Other aliasLA16c-366D1.2
HGNC (Hugo) PRR35
LocusID (NCBI) 146325
Atlas_Id 72285
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 610422 and ends at 615529 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR35   14139
Cards
Entrez_Gene (NCBI)PRR35  146325  proline rich 35
AliasesC16orf11; LA16c-366D1.2
GeneCards (Weizmann)PRR35
Ensembl hg19 (Hinxton)ENSG00000161992 [Gene_View]  chr16:610422-615529 [Contig_View]  PRR35 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161992 [Gene_View]  chr16:610422-615529 [Contig_View]  PRR35 [Vega]
ICGC DataPortalENSG00000161992
TCGA cBioPortalPRR35
AceView (NCBI)PRR35
Genatlas (Paris)PRR35
WikiGenes146325
SOURCE (Princeton)PRR35
Genetics Home Reference (NIH)PRR35
Genomic and cartography
GoldenPath hg19 (UCSC)PRR35  -     chr16:610422-615529 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR35  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblPRR35 - 16p13.3 [CytoView hg19]  PRR35 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPRR35 [Mapview hg19]  PRR35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC016613 HQ258060
RefSeq transcript (Entrez)NM_145270
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)PRR35
Cluster EST : UnigeneHs.632220 [ NCBI ]
CGAP (NCI)Hs.632220
Alternative Splicing GalleryENSG00000161992
Gene ExpressionPRR35 [ NCBI-GEO ]   PRR35 [ EBI - ARRAY_EXPRESS ]   PRR35 [ SEEK ]   PRR35 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146325
GTEX Portal (Tissue expression)PRR35
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG20
Splice isoforms : SwissVarP0CG20
PhosPhoSitePlusP0CG20
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR35
DMDM Disease mutations146325
Blocks (Seattle)PRR35
SuperfamilyP0CG20
Human Protein AtlasENSG00000161992
Peptide AtlasP0CG20
HPRD10046
IPIIPI00887646   
Protein Interaction databases
DIP (DOE-UCLA)P0CG20
IntAct (EBI)P0CG20
FunCoupENSG00000161992
BioGRIDPRR35
STRING (EMBL)PRR35
ZODIACPRR35
Ontologies - Pathways
QuickGOP0CG20
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR35
Atlas of Cancer Signalling NetworkPRR35
Wikipedia pathwaysPRR35
Orthology - Evolution
OrthoDB146325
GeneTree (enSembl)ENSG00000161992
Phylogenetic Trees/Animal Genes : TreeFamPRR35
HOVERGENP0CG20
HOGENOMP0CG20
Homologs : HomoloGenePRR35
Homology/Alignments : Family Browser (UCSC)PRR35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR35
dbVarPRR35
ClinVarPRR35
1000_GenomesPRR35 
Exome Variant ServerPRR35
ExAC (Exome Aggregation Consortium)PRR35 (select the gene name)
Genetic variants : HAPMAP146325
Genomic Variants (DGV)PRR35 [DGVbeta]
DECIPHER (Syndromes)16:610422-615529  ENSG00000161992
CONAN: Copy Number AnalysisPRR35 
Mutations
ICGC Data PortalPRR35 
TCGA Data PortalPRR35 
Broad Tumor PortalPRR35
OASIS PortalPRR35 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR35
BioMutasearch PRR35
DgiDB (Drug Gene Interaction Database)PRR35
DoCM (Curated mutations)PRR35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR35 (select a term)
intoGenPRR35
Cancer3DPRR35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR35
Genetic Testing Registry PRR35
NextProtP0CG20 [Medical]
TSGene146325
GENETestsPRR35
Huge Navigator PRR35 [HugePedia]
snp3D : Map Gene to Disease146325
BioCentury BCIQPRR35
ClinGenPRR35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146325
Chemical/Pharm GKB GenePA25524
Clinical trialPRR35
Miscellaneous
canSAR (ICR)PRR35 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR35
EVEXPRR35
GoPubMedPRR35
iHOPPRR35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:39:53 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.