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PRR36 (proline rich 36)

Identity

Other alias-
HGNC (Hugo) PRR36
LocusID (NCBI) 80164
Atlas_Id 72286
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7868719 and ends at 7874441 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR36   26172
Cards
Entrez_Gene (NCBI)PRR36  80164  proline rich 36
Aliases
GeneCards (Weizmann)PRR36
Ensembl hg19 (Hinxton)ENSG00000183248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183248 [Gene_View]  chr19:7868719-7874441 [Contig_View]  PRR36 [Vega]
ICGC DataPortalENSG00000183248
TCGA cBioPortalPRR36
AceView (NCBI)PRR36
Genatlas (Paris)PRR36
WikiGenes80164
SOURCE (Princeton)PRR36
Genetics Home Reference (NIH)PRR36
Genomic and cartography
GoldenPath hg38 (UCSC)PRR36  -     chr19:7868719-7874441 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR36  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblPRR36 - 19p13.2 [CytoView hg19]  PRR36 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIPRR36 [Mapview hg19]  PRR36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025837 AK096643 AL442075 AL537525 BE791180
RefSeq transcript (Entrez)NM_001080403 NM_001190467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR36
Cluster EST : UnigeneHs.288540 [ NCBI ]
CGAP (NCI)Hs.288540
Alternative Splicing GalleryENSG00000183248
Gene ExpressionPRR36 [ NCBI-GEO ]   PRR36 [ EBI - ARRAY_EXPRESS ]   PRR36 [ SEEK ]   PRR36 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80164
GTEX Portal (Tissue expression)PRR36
Human Protein AtlasENSG00000183248-PRR36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6K5
Splice isoforms : SwissVarQ9H6K5
PhosPhoSitePlusQ9H6K5
Domains : Interpro (EBI)DUF4596   
Domain families : Pfam (Sanger)DUF4596 (PF15363)   
Domain families : Pfam (NCBI)pfam15363   
Conserved Domain (NCBI)PRR36
DMDM Disease mutations80164
Blocks (Seattle)PRR36
SuperfamilyQ9H6K5
Human Protein Atlas [tissue]ENSG00000183248-PRR36 [tissue]
Peptide AtlasQ9H6K5
IPIIPI00018081   IPI01014613   IPI00747352   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6K5
IntAct (EBI)Q9H6K5
FunCoupENSG00000183248
BioGRIDPRR36
STRING (EMBL)PRR36
ZODIACPRR36
Ontologies - Pathways
QuickGOQ9H6K5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRR36
Atlas of Cancer Signalling NetworkPRR36
Wikipedia pathwaysPRR36
Orthology - Evolution
OrthoDB80164
GeneTree (enSembl)ENSG00000183248
Phylogenetic Trees/Animal Genes : TreeFamPRR36
HOVERGENQ9H6K5
HOGENOMQ9H6K5
Homologs : HomoloGenePRR36
Homology/Alignments : Family Browser (UCSC)PRR36
Gene fusions - Rearrangements
Tumor Fusion PortalPRR36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR36
dbVarPRR36
ClinVarPRR36
1000_GenomesPRR36 
Exome Variant ServerPRR36
ExAC (Exome Aggregation Consortium)ENSG00000183248
GNOMAD BrowserENSG00000183248
Genetic variants : HAPMAP80164
Genomic Variants (DGV)PRR36 [DGVbeta]
DECIPHERPRR36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR36 
Mutations
ICGC Data PortalPRR36 
TCGA Data PortalPRR36 
Broad Tumor PortalPRR36
OASIS PortalPRR36 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRR36
BioMutasearch PRR36
DgiDB (Drug Gene Interaction Database)PRR36
DoCM (Curated mutations)PRR36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR36 (select a term)
intoGenPRR36
Cancer3DPRR36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRR36
MedgenPRR36
Genetic Testing Registry PRR36
NextProtQ9H6K5 [Medical]
TSGene80164
GENETestsPRR36
Target ValidationPRR36
Huge Navigator PRR36 [HugePedia]
snp3D : Map Gene to Disease80164
BioCentury BCIQPRR36
ClinGenPRR36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80164
Chemical/Pharm GKB GenePA166123730
Clinical trialPRR36
Miscellaneous
canSAR (ICR)PRR36 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR36
EVEXPRR36
GoPubMedPRR36
iHOPPRR36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:41 CET 2017

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