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PRR4 (proline rich 4)

Identity

Alias (NCBI)LPRP
PROL4
HGNC (Hugo) PRR4
HGNC Alias symbLPRP
HGNC Previous namePROL4
LocusID (NCBI) 11272
Atlas_Id 72287
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10845849 and ends at 10849475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DIP2A (21q22.3) / PRR4 (12p13.2)EXOSC7 (3p21.31) / PRR4 (12p13.2)FBXW7 (4q31.3) / PRR4 (12p13.2)
FRYL (4p11) / PRR4 (12p13.2)PRR4 (12p13.2) / FRYL (4p11)PRR4 (12p13.2) / GIGYF2 (2q37.1)
PRR4 (12p13.2) / LTF (3p21.31)PRR4 (12p13.2) / MYH11 (16p13.11)PRR4 (12p13.2) / NR2C2 (3p25.1)
PRR4 (12p13.2) / RNPEP (1q32.1)PRR4 (12p13.2) / ULK1 (12q24.33)TSPAN9 (12p13.33) / PRR4 (12p13.2)
TSPAN9 PRR4DIP2A PRR4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PRR4   18020
Cards
Entrez_Gene (NCBI)PRR4    proline rich 4
AliasesLPRP; PROL4
GeneCards (Weizmann)PRR4
Ensembl hg19 (Hinxton)ENSG00000111215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111215 [Gene_View]  ENSG00000111215 [Sequence]  chr12:10845849-10849475 [Contig_View]  PRR4 [Vega]
ICGC DataPortalENSG00000111215
TCGA cBioPortalPRR4
AceView (NCBI)PRR4
Genatlas (Paris)PRR4
SOURCE (Princeton)PRR4
Genetics Home Reference (NIH)PRR4
Genomic and cartography
GoldenPath hg38 (UCSC)PRR4  -     chr12:10845849-10849475 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR4  -     12p13.2   [Description]    (hg19-Feb_2009)
GoldenPathPRR4 - 12p13.2 [CytoView hg19]  PRR4 - 12p13.2 [CytoView hg38]
ImmunoBaseENSG00000111215
Genome Data Viewer NCBIPRR4 [Mapview hg19]  
OMIM605359   
Gene and transcription
Genbank (Entrez)AF530472 AK292934 AK292991 AK304321 AK311715
RefSeq transcript (Entrez)NM_001098538 NM_007244
Consensus coding sequences : CCDS (NCBI)PRR4
Gene ExpressionPRR4 [ NCBI-GEO ]   PRR4 [ EBI - ARRAY_EXPRESS ]   PRR4 [ SEEK ]   PRR4 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR4 [ Firebrowse - Broad ]
GenevisibleExpression of PRR4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11272
GTEX Portal (Tissue expression)PRR4
Human Protein AtlasENSG00000111215-PRR4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16378   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16378  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16378
PhosPhoSitePlusQ16378
Domains : Interpro (EBI)Pro-rich   
Domain families : Pfam (Sanger)Pro-rich (PF15240)   
Domain families : Pfam (NCBI)pfam15240   
Domain families : Smart (EMBL)Pro-rich (SM01412)  
Conserved Domain (NCBI)PRR4
SuperfamilyQ16378
AlphaFold pdb e-kbQ16378   
Human Protein Atlas [tissue]ENSG00000111215-PRR4 [tissue]
HPRD09248
Protein Interaction databases
DIP (DOE-UCLA)Q16378
IntAct (EBI)Q16378
BioGRIDPRR4
STRING (EMBL)PRR4
ZODIACPRR4
Ontologies - Pathways
QuickGOQ16378
Ontology : AmiGOretina homeostasis  protein binding  extracellular space  visual perception  
Ontology : EGO-EBIretina homeostasis  protein binding  extracellular space  visual perception  
NDEx NetworkPRR4
Atlas of Cancer Signalling NetworkPRR4
Wikipedia pathwaysPRR4
Orthology - Evolution
OrthoDB11272
GeneTree (enSembl)ENSG00000111215
Phylogenetic Trees/Animal Genes : TreeFamPRR4
Homologs : HomoloGenePRR4
Homology/Alignments : Family Browser (UCSC)PRR4
Gene fusions - Rearrangements
Fusion : QuiverPRR4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR4
dbVarPRR4
ClinVarPRR4
MonarchPRR4
1000_GenomesPRR4 
Exome Variant ServerPRR4
GNOMAD BrowserENSG00000111215
Varsome BrowserPRR4
ACMGPRR4 variants
VarityQ16378
Genomic Variants (DGV)PRR4 [DGVbeta]
DECIPHERPRR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR4 
Mutations
ICGC Data PortalPRR4 
TCGA Data PortalPRR4 
Broad Tumor PortalPRR4
OASIS PortalPRR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRR4
Mutations and Diseases : HGMDPRR4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPRR4
DgiDB (Drug Gene Interaction Database)PRR4
DoCM (Curated mutations)PRR4
CIViC (Clinical Interpretations of Variants in Cancer)PRR4
Cancer3DPRR4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605359   
Orphanet
DisGeNETPRR4
MedgenPRR4
Genetic Testing Registry PRR4
NextProtQ16378 [Medical]
GENETestsPRR4
Target ValidationPRR4
Huge Navigator PRR4 [HugePedia]
ClinGenPRR4
Clinical trials, drugs, therapy
MyCancerGenomePRR4
Protein Interactions : CTDPRR4
Pharm GKB GenePA33806
PharosQ16378
Clinical trialPRR4
Miscellaneous
canSAR (ICR)PRR4
HarmonizomePRR4
DataMed IndexPRR4
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:17:21 CEST 2021

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