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PRR5 (proline rich 5)

Identity

Alias_namesproline rich 5 (renal)
Alias_symbol (synonym)PP610
FLJ20185k
Protor-1
Other aliasPROTOR-1
PROTOR1
HGNC (Hugo) PRR5
LocusID (NCBI) 55615
Atlas_Id 43633
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 45064427 and ends at 45133561 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRR5 (22q13.31) / ARHGAP8 (22q13.31)PRR5 (22q13.31) / RAB14 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR5   31682
Cards
Entrez_Gene (NCBI)PRR5  55615  proline rich 5
AliasesFLJ20185k; PP610; PROTOR-1; PROTOR1
GeneCards (Weizmann)PRR5
Ensembl hg19 (Hinxton)ENSG00000186654 [Gene_View]  chr22:45064427-45133561 [Contig_View]  PRR5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186654 [Gene_View]  chr22:45064427-45133561 [Contig_View]  PRR5 [Vega]
ICGC DataPortalENSG00000186654
TCGA cBioPortalPRR5
AceView (NCBI)PRR5
Genatlas (Paris)PRR5
WikiGenes55615
SOURCE (Princeton)PRR5
Genetics Home Reference (NIH)PRR5
Genomic and cartography
GoldenPath hg19 (UCSC)PRR5  -     chr22:45064427-45133561 +  22q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR5  -     22q13.31   [Description]    (hg38-Dec_2013)
EnsemblPRR5 - 22q13.31 [CytoView hg19]  PRR5 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIPRR5 [Mapview hg19]  PRR5 [Mapview hg38]
OMIM609406   
Gene and transcription
Genbank (Entrez)AF177331 AK000192 AK055848 AK056787 AK091884
RefSeq transcript (Entrez)NM_001017528 NM_001017529 NM_001017530 NM_001198721 NM_015366 NM_181333
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_029235 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)PRR5
Cluster EST : UnigeneHs.102336 [ NCBI ]
CGAP (NCI)Hs.102336
Alternative Splicing GalleryENSG00000186654
Gene ExpressionPRR5 [ NCBI-GEO ]   PRR5 [ EBI - ARRAY_EXPRESS ]   PRR5 [ SEEK ]   PRR5 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55615
GTEX Portal (Tissue expression)PRR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP85299   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP85299  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP85299
Splice isoforms : SwissVarP85299
PhosPhoSitePlusP85299
Domains : Interpro (EBI)Cullin_repeat-like_dom    HbrB   
Domain families : Pfam (Sanger)HbrB (PF08539)   
Domain families : Pfam (NCBI)pfam08539   
Conserved Domain (NCBI)PRR5
DMDM Disease mutations55615
Blocks (Seattle)PRR5
SuperfamilyP85299
Human Protein AtlasENSG00000186654
Peptide AtlasP85299
HPRD18696
IPIIPI00396352   IPI00869329   IPI00216061   IPI00604678   IPI00878190   IPI00878548   IPI00878362   IPI00878889   IPI00879079   IPI00889563   IPI00216060   
Protein Interaction databases
DIP (DOE-UCLA)P85299
IntAct (EBI)P85299
FunCoupENSG00000186654
BioGRIDPRR5
STRING (EMBL)PRR5
ZODIACPRR5
Ontologies - Pathways
QuickGOP85299
Ontology : AmiGOpositive regulation of protein phosphorylation  cytosol  cell cycle  positive regulation of phosphatidylinositol 3-kinase signaling  T cell costimulation  TORC2 complex  phosphatidylinositol-mediated signaling  
Ontology : EGO-EBIpositive regulation of protein phosphorylation  cytosol  cell cycle  positive regulation of phosphatidylinositol 3-kinase signaling  T cell costimulation  TORC2 complex  phosphatidylinositol-mediated signaling  
NDEx NetworkPRR5
Atlas of Cancer Signalling NetworkPRR5
Wikipedia pathwaysPRR5
Orthology - Evolution
OrthoDB55615
GeneTree (enSembl)ENSG00000186654
Phylogenetic Trees/Animal Genes : TreeFamPRR5
HOVERGENP85299
HOGENOMP85299
Homologs : HomoloGenePRR5
Homology/Alignments : Family Browser (UCSC)PRR5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR5
dbVarPRR5
ClinVarPRR5
1000_GenomesPRR5 
Exome Variant ServerPRR5
ExAC (Exome Aggregation Consortium)PRR5 (select the gene name)
Genetic variants : HAPMAP55615
Genomic Variants (DGV)PRR5 [DGVbeta]
DECIPHER (Syndromes)22:45064427-45133561  ENSG00000186654
CONAN: Copy Number AnalysisPRR5 
Mutations
ICGC Data PortalPRR5 
TCGA Data PortalPRR5 
Broad Tumor PortalPRR5
OASIS PortalPRR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR5
DgiDB (Drug Gene Interaction Database)PRR5
DoCM (Curated mutations)PRR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR5 (select a term)
intoGenPRR5
Cancer3DPRR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609406   
Orphanet
MedgenPRR5
Genetic Testing Registry PRR5
NextProtP85299 [Medical]
TSGene55615
GENETestsPRR5
Huge Navigator PRR5 [HugePedia]
snp3D : Map Gene to Disease55615
BioCentury BCIQPRR5
ClinGenPRR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55615
Chemical/Pharm GKB GenePA144596392
Clinical trialPRR5
Miscellaneous
canSAR (ICR)PRR5 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR5
EVEXPRR5
GoPubMedPRR5
iHOPPRR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:09 CET 2017

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