Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PRR5L (proline rich 5 like)

Identity

Alias_symbol (synonym)FLJ14213
PROTOR-2
Other aliasPROTOR2
HGNC (Hugo) PRR5L
LocusID (NCBI) 79899
Atlas_Id 72289
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 36296175 and ends at 36465204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LDLRAD3 (11p13) / PRR5L (11p13)PRR5L (11p13) / TRIM44 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRR5L   25878
Cards
Entrez_Gene (NCBI)PRR5L  79899  proline rich 5 like
AliasesPROTOR2
GeneCards (Weizmann)PRR5L
Ensembl hg19 (Hinxton)ENSG00000135362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135362 [Gene_View]  chr11:36296175-36465204 [Contig_View]  PRR5L [Vega]
ICGC DataPortalENSG00000135362
TCGA cBioPortalPRR5L
AceView (NCBI)PRR5L
Genatlas (Paris)PRR5L
WikiGenes79899
SOURCE (Princeton)PRR5L
Genetics Home Reference (NIH)PRR5L
Genomic and cartography
GoldenPath hg38 (UCSC)PRR5L  -     chr11:36296175-36465204 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR5L  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblPRR5L - 11p13 [CytoView hg19]  PRR5L - 11p13 [CytoView hg38]
Mapping of homologs : NCBIPRR5L [Mapview hg19]  PRR5L [Mapview hg38]
OMIM611728   
Gene and transcription
Genbank (Entrez)AK024275 AK026283 AK055042 BC008922 BC125122
RefSeq transcript (Entrez)NM_001160167 NM_001160168 NM_001160169 NM_024841
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR5L
Cluster EST : UnigeneHs.19987 [ NCBI ]
CGAP (NCI)Hs.19987
Alternative Splicing GalleryENSG00000135362
Gene ExpressionPRR5L [ NCBI-GEO ]   PRR5L [ EBI - ARRAY_EXPRESS ]   PRR5L [ SEEK ]   PRR5L [ MEM ]
Gene Expression Viewer (FireBrowse)PRR5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79899
GTEX Portal (Tissue expression)PRR5L
Human Protein AtlasENSG00000135362-PRR5L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6MZQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6MZQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6MZQ0
Splice isoforms : SwissVarQ6MZQ0
PhosPhoSitePlusQ6MZQ0
Domains : Interpro (EBI)Bit61/PRR5   
Domain families : Pfam (Sanger)HbrB (PF08539)   
Domain families : Pfam (NCBI)pfam08539   
Conserved Domain (NCBI)PRR5L
DMDM Disease mutations79899
Blocks (Seattle)PRR5L
SuperfamilyQ6MZQ0
Human Protein Atlas [tissue]ENSG00000135362-PRR5L [tissue]
Peptide AtlasQ6MZQ0
HPRD07854
IPIIPI00784461   IPI00411757   IPI00646619   IPI00978928   IPI00981256   IPI00984339   IPI00976892   IPI00983343   IPI00982322   IPI00983937   IPI00984947   IPI00979231   IPI00930157   
Protein Interaction databases
DIP (DOE-UCLA)Q6MZQ0
IntAct (EBI)Q6MZQ0
FunCoupENSG00000135362
BioGRIDPRR5L
STRING (EMBL)PRR5L
ZODIACPRR5L
Ontologies - Pathways
QuickGOQ6MZQ0
Ontology : AmiGO###############################################################################################################################################################################################################################################################                          
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                          
NDEx NetworkPRR5L
Atlas of Cancer Signalling NetworkPRR5L
Wikipedia pathwaysPRR5L
Orthology - Evolution
OrthoDB79899
GeneTree (enSembl)ENSG00000135362
Phylogenetic Trees/Animal Genes : TreeFamPRR5L
HOVERGENQ6MZQ0
HOGENOMQ6MZQ0
Homologs : HomoloGenePRR5L
Homology/Alignments : Family Browser (UCSC)PRR5L
Gene fusions - Rearrangements
Fusion : QuiverPRR5L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR5L
dbVarPRR5L
ClinVarPRR5L
1000_GenomesPRR5L 
Exome Variant ServerPRR5L
ExAC (Exome Aggregation Consortium)ENSG00000135362
GNOMAD BrowserENSG00000135362
Genetic variants : HAPMAP79899
Genomic Variants (DGV)PRR5L [DGVbeta]
DECIPHERPRR5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR5L 
Mutations
ICGC Data PortalPRR5L 
TCGA Data PortalPRR5L 
Broad Tumor PortalPRR5L
OASIS PortalPRR5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR5L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR5L
DgiDB (Drug Gene Interaction Database)PRR5L
DoCM (Curated mutations)PRR5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR5L (select a term)
intoGenPRR5L
Cancer3DPRR5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611728   
Orphanet
DisGeNETPRR5L
MedgenPRR5L
Genetic Testing Registry PRR5L
NextProtQ6MZQ0 [Medical]
TSGene79899
GENETestsPRR5L
Target ValidationPRR5L
Huge Navigator PRR5L [HugePedia]
snp3D : Map Gene to Disease79899
BioCentury BCIQPRR5L
ClinGenPRR5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79899
Chemical/Pharm GKB GenePA165543593
Clinical trialPRR5L
Miscellaneous
canSAR (ICR)PRR5L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR5L
EVEXPRR5L
GoPubMedPRR5L
iHOPPRR5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:48:33 CET 2018
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