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PRR7 (proline rich 7 (synaptic))

Identity

Alias_namesproline rich 7 (synaptic)
Alias_symbol (synonym)MGC10772
Other alias-
HGNC (Hugo) PRR7
LocusID (NCBI) 80758
Atlas_Id 72290
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 176873796 and ends at 176883287 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR7   28130
Cards
Entrez_Gene (NCBI)PRR7  80758  proline rich 7 (synaptic)
Aliases
GeneCards (Weizmann)PRR7
Ensembl hg19 (Hinxton)ENSG00000131188 [Gene_View]  chr5:176873796-176883287 [Contig_View]  PRR7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131188 [Gene_View]  chr5:176873796-176883287 [Contig_View]  PRR7 [Vega]
ICGC DataPortalENSG00000131188
TCGA cBioPortalPRR7
AceView (NCBI)PRR7
Genatlas (Paris)PRR7
WikiGenes80758
SOURCE (Princeton)PRR7
Genetics Home Reference (NIH)PRR7
Genomic and cartography
GoldenPath hg19 (UCSC)PRR7  -     chr5:176873796-176883287 +  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRR7  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblPRR7 - 5q35.3 [CytoView hg19]  PRR7 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIPRR7 [Mapview hg19]  PRR7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC004261 BC021240 BC024233 BC033649 BE277571
RefSeq transcript (Entrez)NM_001174101 NM_001174102 NM_030567
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)PRR7
Cluster EST : UnigeneHs.534492 [ NCBI ]
CGAP (NCI)Hs.534492
Alternative Splicing GalleryENSG00000131188
Gene ExpressionPRR7 [ NCBI-GEO ]   PRR7 [ EBI - ARRAY_EXPRESS ]   PRR7 [ SEEK ]   PRR7 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80758
GTEX Portal (Tissue expression)PRR7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB68
Splice isoforms : SwissVarQ8TB68
PhosPhoSitePlusQ8TB68
Domains : Interpro (EBI)Uncharacterised_WW-bd   
Domain families : Pfam (Sanger)WBP-1 (PF11669)   
Domain families : Pfam (NCBI)pfam11669   
Conserved Domain (NCBI)PRR7
DMDM Disease mutations80758
Blocks (Seattle)PRR7
SuperfamilyQ8TB68
Human Protein AtlasENSG00000131188
Peptide AtlasQ8TB68
HPRD15186
IPIIPI00152142   IPI00477588   IPI00953723   IPI00967755   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB68
IntAct (EBI)Q8TB68
FunCoupENSG00000131188
BioGRIDPRR7
STRING (EMBL)PRR7
ZODIACPRR7
Ontologies - Pathways
QuickGOQ8TB68
Ontology : AmiGOintegral component of membrane  cell junction  postsynaptic membrane  
Ontology : EGO-EBIintegral component of membrane  cell junction  postsynaptic membrane  
NDEx NetworkPRR7
Atlas of Cancer Signalling NetworkPRR7
Wikipedia pathwaysPRR7
Orthology - Evolution
OrthoDB80758
GeneTree (enSembl)ENSG00000131188
Phylogenetic Trees/Animal Genes : TreeFamPRR7
HOVERGENQ8TB68
HOGENOMQ8TB68
Homologs : HomoloGenePRR7
Homology/Alignments : Family Browser (UCSC)PRR7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR7
dbVarPRR7
ClinVarPRR7
1000_GenomesPRR7 
Exome Variant ServerPRR7
ExAC (Exome Aggregation Consortium)PRR7 (select the gene name)
Genetic variants : HAPMAP80758
Genomic Variants (DGV)PRR7 [DGVbeta]
DECIPHER (Syndromes)5:176873796-176883287  ENSG00000131188
CONAN: Copy Number AnalysisPRR7 
Mutations
ICGC Data PortalPRR7 
TCGA Data PortalPRR7 
Broad Tumor PortalPRR7
OASIS PortalPRR7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR7
DgiDB (Drug Gene Interaction Database)PRR7
DoCM (Curated mutations)PRR7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR7 (select a term)
intoGenPRR7
Cancer3DPRR7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR7
Genetic Testing Registry PRR7
NextProtQ8TB68 [Medical]
TSGene80758
GENETestsPRR7
Huge Navigator PRR7 [HugePedia]
snp3D : Map Gene to Disease80758
BioCentury BCIQPRR7
ClinGenPRR7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80758
Chemical/Pharm GKB GenePA134939770
Clinical trialPRR7
Miscellaneous
canSAR (ICR)PRR7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR7
EVEXPRR7
GoPubMedPRR7
iHOPPRR7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:55 CET 2017

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