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PRR9 (proline rich 9)

Identity

Other alias-
HGNC (Hugo) PRR9
LocusID (NCBI) 574414
Atlas_Id 72292
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153217584 and ends at 153219317 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRR9   32057
Cards
Entrez_Gene (NCBI)PRR9  574414  proline rich 9
Aliases
GeneCards (Weizmann)PRR9
Ensembl hg19 (Hinxton)ENSG00000203783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203783 [Gene_View]  chr1:153217584-153219317 [Contig_View]  PRR9 [Vega]
ICGC DataPortalENSG00000203783
TCGA cBioPortalPRR9
AceView (NCBI)PRR9
Genatlas (Paris)PRR9
WikiGenes574414
SOURCE (Princeton)PRR9
Genetics Home Reference (NIH)PRR9
Genomic and cartography
GoldenPath hg38 (UCSC)PRR9  -     chr1:153217584-153219317 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRR9  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblPRR9 - 1q21.3 [CytoView hg19]  PRR9 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIPRR9 [Mapview hg19]  PRR9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI432195 BX100130 CD387786
RefSeq transcript (Entrez)NM_001195571
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRR9
Cluster EST : UnigeneHs.135098 [ NCBI ]
CGAP (NCI)Hs.135098
Alternative Splicing GalleryENSG00000203783
Gene ExpressionPRR9 [ NCBI-GEO ]   PRR9 [ EBI - ARRAY_EXPRESS ]   PRR9 [ SEEK ]   PRR9 [ MEM ]
Gene Expression Viewer (FireBrowse)PRR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574414
GTEX Portal (Tissue expression)PRR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T870   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T870  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T870
Splice isoforms : SwissVarQ5T870
PhosPhoSitePlusQ5T870
Domains : Interpro (EBI)SPRR/LCE   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRR9
DMDM Disease mutations574414
Blocks (Seattle)PRR9
SuperfamilyQ5T870
Human Protein AtlasENSG00000203783
Peptide AtlasQ5T870
IPIIPI00514292   
Protein Interaction databases
DIP (DOE-UCLA)Q5T870
IntAct (EBI)Q5T870
FunCoupENSG00000203783
BioGRIDPRR9
STRING (EMBL)PRR9
ZODIACPRR9
Ontologies - Pathways
QuickGOQ5T870
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  
NDEx NetworkPRR9
Atlas of Cancer Signalling NetworkPRR9
Wikipedia pathwaysPRR9
Orthology - Evolution
OrthoDB574414
GeneTree (enSembl)ENSG00000203783
Phylogenetic Trees/Animal Genes : TreeFamPRR9
HOVERGENQ5T870
HOGENOMQ5T870
Homologs : HomoloGenePRR9
Homology/Alignments : Family Browser (UCSC)PRR9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRR9
dbVarPRR9
ClinVarPRR9
1000_GenomesPRR9 
Exome Variant ServerPRR9
ExAC (Exome Aggregation Consortium)PRR9 (select the gene name)
Genetic variants : HAPMAP574414
Genomic Variants (DGV)PRR9 [DGVbeta]
DECIPHERPRR9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRR9 
Mutations
ICGC Data PortalPRR9 
TCGA Data PortalPRR9 
Broad Tumor PortalPRR9
OASIS PortalPRR9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRR9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRR9
DgiDB (Drug Gene Interaction Database)PRR9
DoCM (Curated mutations)PRR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRR9 (select a term)
intoGenPRR9
Cancer3DPRR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRR9
Genetic Testing Registry PRR9
NextProtQ5T870 [Medical]
TSGene574414
GENETestsPRR9
Target ValidationPRR9
Huge Navigator PRR9 [HugePedia]
snp3D : Map Gene to Disease574414
BioCentury BCIQPRR9
ClinGenPRR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574414
Chemical/Pharm GKB GenePA142671129
Clinical trialPRR9
Miscellaneous
canSAR (ICR)PRR9 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRR9
EVEXPRR9
GoPubMedPRR9
iHOPPRR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:36 CEST 2017

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