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PRRC1 (proline rich coiled-coil 1)

Identity

Alias_namesproline-rich coiled-coil 1
Alias_symbol (synonym)FLJ32875
Other alias-
HGNC (Hugo) PRRC1
LocusID (NCBI) 133619
Atlas_Id 54557
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 126853301 and ends at 126890780 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CUL3 (2q36.2) / PRRC1 (5q23.2)KMT2A (11q23.3) / PRRC1 (5q23.2)PRRC1 (5q23.2) / PRRC1 (5q23.2)
RUNX1 (21q22.12) / PRRC1 (5q23.2)KMT2A 11q23.3 / PRRC1 5q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRC1   28164
Cards
Entrez_Gene (NCBI)PRRC1  133619  proline rich coiled-coil 1
Aliases
GeneCards (Weizmann)PRRC1
Ensembl hg19 (Hinxton)ENSG00000164244 [Gene_View]  chr5:126853301-126890780 [Contig_View]  PRRC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164244 [Gene_View]  chr5:126853301-126890780 [Contig_View]  PRRC1 [Vega]
ICGC DataPortalENSG00000164244
TCGA cBioPortalPRRC1
AceView (NCBI)PRRC1
Genatlas (Paris)PRRC1
WikiGenes133619
SOURCE (Princeton)PRRC1
Genetics Home Reference (NIH)PRRC1
Genomic and cartography
GoldenPath hg19 (UCSC)PRRC1  -     chr5:126853301-126890780 +  5q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRRC1  -     5q23.2   [Description]    (hg38-Dec_2013)
EnsemblPRRC1 - 5q23.2 [CytoView hg19]  PRRC1 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIPRRC1 [Mapview hg19]  PRRC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ427339 AJ441110 AJ496322 AJ515158 AJ515428
RefSeq transcript (Entrez)NM_001286808 NM_130809
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)PRRC1
Cluster EST : UnigeneHs.483259 [ NCBI ]
CGAP (NCI)Hs.483259
Alternative Splicing GalleryENSG00000164244
Gene ExpressionPRRC1 [ NCBI-GEO ]   PRRC1 [ EBI - ARRAY_EXPRESS ]   PRRC1 [ SEEK ]   PRRC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133619
GTEX Portal (Tissue expression)PRRC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M27
Splice isoforms : SwissVarQ96M27
PhosPhoSitePlusQ96M27
Domains : Interpro (EBI)ITPase-like_fam    NTPase/PRRC1    PRRC1   
Domain families : Pfam (Sanger)NTPase_I-T (PF01931)   
Domain families : Pfam (NCBI)pfam01931   
Conserved Domain (NCBI)PRRC1
DMDM Disease mutations133619
Blocks (Seattle)PRRC1
SuperfamilyQ96M27
Human Protein AtlasENSG00000164244
Peptide AtlasQ96M27
HPRD14052
IPIIPI00868973   IPI00744319   IPI00217053   IPI00868717   IPI00868764   IPI00942375   
Protein Interaction databases
DIP (DOE-UCLA)Q96M27
IntAct (EBI)Q96M27
FunCoupENSG00000164244
BioGRIDPRRC1
STRING (EMBL)PRRC1
ZODIACPRRC1
Ontologies - Pathways
QuickGOQ96M27
Ontology : AmiGOprotein binding  Golgi apparatus  
Ontology : EGO-EBIprotein binding  Golgi apparatus  
NDEx NetworkPRRC1
Atlas of Cancer Signalling NetworkPRRC1
Wikipedia pathwaysPRRC1
Orthology - Evolution
OrthoDB133619
GeneTree (enSembl)ENSG00000164244
Phylogenetic Trees/Animal Genes : TreeFamPRRC1
HOVERGENQ96M27
HOGENOMQ96M27
Homologs : HomoloGenePRRC1
Homology/Alignments : Family Browser (UCSC)PRRC1
Gene fusions - Rearrangements
Fusion : MitelmanRUNX1/PRRC1 [21q22.12/5q23.2]  [t(5;21)(q23;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRC1
dbVarPRRC1
ClinVarPRRC1
1000_GenomesPRRC1 
Exome Variant ServerPRRC1
ExAC (Exome Aggregation Consortium)PRRC1 (select the gene name)
Genetic variants : HAPMAP133619
Genomic Variants (DGV)PRRC1 [DGVbeta]
DECIPHER (Syndromes)5:126853301-126890780  ENSG00000164244
CONAN: Copy Number AnalysisPRRC1 
Mutations
ICGC Data PortalPRRC1 
TCGA Data PortalPRRC1 
Broad Tumor PortalPRRC1
OASIS PortalPRRC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRRC1
DgiDB (Drug Gene Interaction Database)PRRC1
DoCM (Curated mutations)PRRC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRC1 (select a term)
intoGenPRRC1
Cancer3DPRRC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRRC1
Genetic Testing Registry PRRC1
NextProtQ96M27 [Medical]
TSGene133619
GENETestsPRRC1
Huge Navigator PRRC1 [HugePedia]
snp3D : Map Gene to Disease133619
BioCentury BCIQPRRC1
ClinGenPRRC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133619
Chemical/Pharm GKB GenePA162400175
Clinical trialPRRC1
Miscellaneous
canSAR (ICR)PRRC1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRC1
EVEXPRRC1
GoPubMedPRRC1
iHOPPRRC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:51 CEST 2017

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