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PRRC2B (proline rich coiled-coil 2B)

Identity

Alias_namesKIAA0515
BAT2L
BAT2L1
KIAA0515
HLA-B associated transcript 2-like
HLA-B associated transcript 2-like 1
proline-rich coiled-coil 2B
Alias_symbol (synonym)MGC10526
LQFBS-1
Other alias
HGNC (Hugo) PRRC2B
LocusID (NCBI) 84726
Atlas_Id 54558
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 131430090 and ends at 131500188 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLEC18A (16q22.1) / PRRC2B (9q34.13)MAPKAP1 (9q33.3) / PRRC2B (9q34.13)PRRC2B (9q34.13) / COPZ1 (12q13.13)
PRRC2B (9q34.13) / CREB3L1 (11p11.2)PRRC2B (9q34.13) / CSH1 (17q23.3)PRRC2B (9q34.13) / GRK5 (10q26.11)
PRRC2B (9q34.13) / HTR3C (3q27.1)PRRC2B (9q34.13) / MGMT (10q26.3)PRRC2B (9q34.13) / NCOR2 (12q24.31)
PRRC2B (9q34.13) / NUP155 (5p13.2)PRRC2B (9q34.13) / NUP214 (9q34.13)PRRC2B (9q34.13) / PRRC2B (9q34.13)
PRRC2B (9q34.13) / SET (9q34.11)PRRC2B (9q34.13) / STC1 (8p21.2)PRRC2B (9q34.13) / ZNF333 (19p13.12)
RALGAPA1 (14q13.2) / PRRC2B (9q34.13)SDC1 (2p24.1) / PRRC2B (9q34.13)MAPKAP1 9q33.3 / PRRC2B 9q34.13
PRRC2B 9q34.13 / NUP155 5p13.2PRRC2B 9q34.13 / NUP214 9q34.13PRRC2B 9q34.13 / SET 9q34.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRC2B   28121
Cards
Entrez_Gene (NCBI)PRRC2B  84726  proline rich coiled-coil 2B
AliasesBAT2L; BAT2L1; KIAA0515; LQFBS-1
GeneCards (Weizmann)PRRC2B
Ensembl hg19 (Hinxton)ENSG00000130723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130723 [Gene_View]  chr9:131430090-131500188 [Contig_View]  PRRC2B [Vega]
ICGC DataPortalENSG00000130723
TCGA cBioPortalPRRC2B
AceView (NCBI)PRRC2B
Genatlas (Paris)PRRC2B
WikiGenes84726
SOURCE (Princeton)PRRC2B
Genetics Home Reference (NIH)PRRC2B
Genomic and cartography
GoldenPath hg38 (UCSC)PRRC2B  -     chr9:131430090-131500188 +  9q34.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRC2B  -     9q34.13   [Description]    (hg19-Feb_2009)
EnsemblPRRC2B - 9q34.13 [CytoView hg19]  PRRC2B - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBIPRRC2B [Mapview hg19]  PRRC2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011087 AK025675 AK026025 AK026162 AK055916
RefSeq transcript (Entrez)NM_013318 NM_032640
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRC2B
Cluster EST : UnigeneHs.743955 [ NCBI ]
CGAP (NCI)Hs.743955
Alternative Splicing GalleryENSG00000130723
Gene ExpressionPRRC2B [ NCBI-GEO ]   PRRC2B [ EBI - ARRAY_EXPRESS ]   PRRC2B [ SEEK ]   PRRC2B [ MEM ]
Gene Expression Viewer (FireBrowse)PRRC2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84726
GTEX Portal (Tissue expression)PRRC2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JSZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JSZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JSZ5
Splice isoforms : SwissVarQ5JSZ5
PhosPhoSitePlusQ5JSZ5
Domains : Interpro (EBI)BAT2_N    PRRC2   
Domain families : Pfam (Sanger)BAT2_N (PF07001)   
Domain families : Pfam (NCBI)pfam07001   
Conserved Domain (NCBI)PRRC2B
DMDM Disease mutations84726
Blocks (Seattle)PRRC2B
SuperfamilyQ5JSZ5
Human Protein AtlasENSG00000130723
Peptide AtlasQ5JSZ5
IPIIPI00844323   IPI00741537   IPI00827594   IPI00735915   IPI00970956   IPI01013041   IPI00002466   IPI00816114   IPI00787462   IPI00643923   
Protein Interaction databases
DIP (DOE-UCLA)Q5JSZ5
IntAct (EBI)Q5JSZ5
FunCoupENSG00000130723
BioGRIDPRRC2B
STRING (EMBL)PRRC2B
ZODIACPRRC2B
Ontologies - Pathways
QuickGOQ5JSZ5
Ontology : AmiGORNA binding  protein binding  cell differentiation  
Ontology : EGO-EBIRNA binding  protein binding  cell differentiation  
NDEx NetworkPRRC2B
Atlas of Cancer Signalling NetworkPRRC2B
Wikipedia pathwaysPRRC2B
Orthology - Evolution
OrthoDB84726
GeneTree (enSembl)ENSG00000130723
Phylogenetic Trees/Animal Genes : TreeFamPRRC2B
HOVERGENQ5JSZ5
HOGENOMQ5JSZ5
Homologs : HomoloGenePRRC2B
Homology/Alignments : Family Browser (UCSC)PRRC2B
Gene fusions - Rearrangements
Fusion : MitelmanMAPKAP1/PRRC2B [9q33.3/9q34.13]  [t(9;9)(q33;q34)]  
Fusion : MitelmanPRRC2B/MGMT [9q34.13/10q26.3]  [t(9;10)(q34;q26)]  
Fusion : MitelmanPRRC2B/NUP155 [9q34.13/5p13.2]  [t(5;9)(p13;q34)]  
Fusion : MitelmanPRRC2B/NUP214 [9q34.13/9q34.13]  [t(9;9)(q34;q34)]  
Fusion : MitelmanPRRC2B/SET [9q34.13/9q34.11]  [t(9;9)(q34;q34)]  
Fusion: TCGAMAPKAP1 9q33.3 PRRC2B 9q34.13 BRCA
Fusion: TCGAPRRC2B 9q34.13 NUP155 5p13.2 OV
Fusion: TCGAPRRC2B 9q34.13 NUP214 9q34.13 BRCA LUAD
Fusion: TCGAPRRC2B 9q34.13 SET 9q34.11 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRC2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRC2B
dbVarPRRC2B
ClinVarPRRC2B
1000_GenomesPRRC2B 
Exome Variant ServerPRRC2B
ExAC (Exome Aggregation Consortium)PRRC2B (select the gene name)
Genetic variants : HAPMAP84726
Genomic Variants (DGV)PRRC2B [DGVbeta]
DECIPHERPRRC2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRC2B 
Mutations
ICGC Data PortalPRRC2B 
TCGA Data PortalPRRC2B 
Broad Tumor PortalPRRC2B
OASIS PortalPRRC2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRC2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRC2B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PRRC2B
DgiDB (Drug Gene Interaction Database)PRRC2B
DoCM (Curated mutations)PRRC2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRC2B (select a term)
intoGenPRRC2B
Cancer3DPRRC2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRRC2B
Genetic Testing Registry PRRC2B
NextProtQ5JSZ5 [Medical]
TSGene84726
GENETestsPRRC2B
Target ValidationPRRC2B
Huge Navigator PRRC2B [HugePedia]
snp3D : Map Gene to Disease84726
BioCentury BCIQPRRC2B
ClinGenPRRC2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84726
Chemical/Pharm GKB GenePA165585468
Clinical trialPRRC2B
Miscellaneous
canSAR (ICR)PRRC2B (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRC2B
EVEXPRRC2B
GoPubMedPRRC2B
iHOPPRRC2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:26:44 CEST 2017

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