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PRRC2C (proline rich coiled-coil 2C)

Identity

Alias_namesBAT2D1
BAT2L2
BAT2 domain containing 1
HLA-B associated transcript 2-like 2
proline-rich coiled-coil 2C
Alias_symbol (synonym)KIAA1096
XTP2
Other aliasBAT2-iso
HGNC (Hugo) PRRC2C
LocusID (NCBI) 23215
Atlas_Id 51834
Location 1q24.3  [Link to chromosome band 1q24]
Location_base_pair Starts at 171485527 and ends at 171593511 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APLP2 (11q24.3) / PRRC2C (1q24.3)DYRK1A (21q22.13) / PRRC2C (1q24.3)MOB2 (11p15.5) / PRRC2C (1q24.3)
NBAS (2p24.3) / PRRC2C (1q24.3)PRH1-PRR4 (12p13.2) / PRRC2C (1q24.3)PRRC2C (1q24.3) / CENPL (1q25.1)
PRRC2C (1q24.3) / COL3A1 (2q32.2)PRRC2C (1q24.3) / CSTF1 (20q13.2)PRRC2C (1q24.3) / FASLG (1q24.3)
PRRC2C (1q24.3) / MTHFD1 (14q23.3)PRRC2C (1q24.3) / PHLDA1 (12q21.2)PRRC2C (1q24.3) / PRRC2C (1q24.3)
PRRC2C (1q24.3) / TGOLN2 (2p11.2)PRRC2C (1q24.3) / ZC3H13 (13q14.13)SPATA13 (13q12.12) / PRRC2C (1q24.3)
STOM (9q33.2) / PRRC2C (1q24.3)PRRC2C 1q24.3 / CENPL 1q25.1PRRC2C 1q24.3 / FASLG 1q24.3
SPATA13 13q12.12 / PRRC2C 1q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRC2C   24903
Cards
Entrez_Gene (NCBI)PRRC2C  23215  proline rich coiled-coil 2C
AliasesBAT2-iso; BAT2D1; BAT2L2; XTP2
GeneCards (Weizmann)PRRC2C
Ensembl hg19 (Hinxton)ENSG00000117523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117523 [Gene_View]  chr1:171485527-171593511 [Contig_View]  PRRC2C [Vega]
ICGC DataPortalENSG00000117523
TCGA cBioPortalPRRC2C
AceView (NCBI)PRRC2C
Genatlas (Paris)PRRC2C
WikiGenes23215
SOURCE (Princeton)PRRC2C
Genetics Home Reference (NIH)PRRC2C
Genomic and cartography
GoldenPath hg38 (UCSC)PRRC2C  -     chr1:171485527-171593511 +  1q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRC2C  -     1q24.3   [Description]    (hg19-Feb_2009)
EnsemblPRRC2C - 1q24.3 [CytoView hg19]  PRRC2C - 1q24.3 [CytoView hg38]
Mapping of homologs : NCBIPRRC2C [Mapview hg19]  PRRC2C [Mapview hg38]
OMIM617373   
Gene and transcription
Genbank (Entrez)AB029019 AF253978 AF488829 AK000190 AK022492
RefSeq transcript (Entrez)NM_015172
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRC2C
Cluster EST : UnigeneHs.494614 [ NCBI ]
CGAP (NCI)Hs.494614
Alternative Splicing GalleryENSG00000117523
Gene ExpressionPRRC2C [ NCBI-GEO ]   PRRC2C [ EBI - ARRAY_EXPRESS ]   PRRC2C [ SEEK ]   PRRC2C [ MEM ]
Gene Expression Viewer (FireBrowse)PRRC2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23215
GTEX Portal (Tissue expression)PRRC2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y520   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y520  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y520
Splice isoforms : SwissVarQ9Y520
PhosPhoSitePlusQ9Y520
Domains : Interpro (EBI)BAT2_N    PRRC2   
Domain families : Pfam (Sanger)BAT2_N (PF07001)   
Domain families : Pfam (NCBI)pfam07001   
Conserved Domain (NCBI)PRRC2C
DMDM Disease mutations23215
Blocks (Seattle)PRRC2C
SuperfamilyQ9Y520
Human Protein AtlasENSG00000117523
Peptide AtlasQ9Y520
HPRD16539
IPIIPI00902898   IPI01014173   IPI01014089   IPI00739117   IPI00148247   IPI00083708   IPI00976878   IPI00941219   IPI00902970   IPI00982971   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y520
IntAct (EBI)Q9Y520
FunCoupENSG00000117523
BioGRIDPRRC2C
STRING (EMBL)PRRC2C
ZODIACPRRC2C
Ontologies - Pathways
QuickGOQ9Y520
Ontology : AmiGOhematopoietic progenitor cell differentiation  RNA binding  protein C-terminus binding  membrane  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  RNA binding  protein C-terminus binding  membrane  
NDEx NetworkPRRC2C
Atlas of Cancer Signalling NetworkPRRC2C
Wikipedia pathwaysPRRC2C
Orthology - Evolution
OrthoDB23215
GeneTree (enSembl)ENSG00000117523
Phylogenetic Trees/Animal Genes : TreeFamPRRC2C
HOVERGENQ9Y520
HOGENOMQ9Y520
Homologs : HomoloGenePRRC2C
Homology/Alignments : Family Browser (UCSC)PRRC2C
Gene fusions - Rearrangements
Fusion : MitelmanPRRC2C/CENPL [1q24.3/1q25.1]  
Fusion : MitelmanPRRC2C/COL3A1 [1q24.3/2q32.2]  [t(1;2)(q24;q32)]  
Fusion : MitelmanPRRC2C/FASLG [1q24.3/1q24.3]  [t(1;1)(q24;q24)]  
Fusion : MitelmanSPATA13/PRRC2C [13q12.12/1q24.3]  [t(1;13)(q24;q12)]  
Fusion: TCGAPRRC2C 1q24.3 CENPL 1q25.1 BRCA
Fusion: TCGAPRRC2C 1q24.3 FASLG 1q24.3 BRCA
Fusion: TCGASPATA13 13q12.12 PRRC2C 1q24.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRC2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRC2C
dbVarPRRC2C
ClinVarPRRC2C
1000_GenomesPRRC2C 
Exome Variant ServerPRRC2C
ExAC (Exome Aggregation Consortium)PRRC2C (select the gene name)
Genetic variants : HAPMAP23215
Genomic Variants (DGV)PRRC2C [DGVbeta]
DECIPHERPRRC2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRC2C 
Mutations
ICGC Data PortalPRRC2C 
TCGA Data PortalPRRC2C 
Broad Tumor PortalPRRC2C
OASIS PortalPRRC2C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRRC2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRRC2C
DgiDB (Drug Gene Interaction Database)PRRC2C
DoCM (Curated mutations)PRRC2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRC2C (select a term)
intoGenPRRC2C
Cancer3DPRRC2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617373   
Orphanet
MedgenPRRC2C
Genetic Testing Registry PRRC2C
NextProtQ9Y520 [Medical]
TSGene23215
GENETestsPRRC2C
Target ValidationPRRC2C
Huge Navigator PRRC2C [HugePedia]
snp3D : Map Gene to Disease23215
BioCentury BCIQPRRC2C
ClinGenPRRC2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23215
Chemical/Pharm GKB GenePA165750415
Clinical trialPRRC2C
Miscellaneous
canSAR (ICR)PRRC2C (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRC2C
EVEXPRRC2C
GoPubMedPRRC2C
iHOPPRRC2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:26:44 CEST 2017

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