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PRRG1 (proline rich and Gla domain 1)

Identity

Alias_namesproline-rich Gla (G-carboxyglutamic acid) polypeptide 1
Alias_symbol (synonym)PRGP1
Other alias
HGNC (Hugo) PRRG1
LocusID (NCBI) 5638
Atlas_Id 72293
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 37349275 and ends at 37457295 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM178B (2q11.2) / PRRG1 (Xp21.1)PRRG1 (Xp21.1) / PLP1 (Xq22.2)PRRG1 (Xp21.1) / TSPAN7 (Xp11.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRG1   9469
Cards
Entrez_Gene (NCBI)PRRG1  5638  proline rich and Gla domain 1
AliasesPRGP1
GeneCards (Weizmann)PRRG1
Ensembl hg19 (Hinxton)ENSG00000130962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130962 [Gene_View]  chrX:37349275-37457295 [Contig_View]  PRRG1 [Vega]
ICGC DataPortalENSG00000130962
TCGA cBioPortalPRRG1
AceView (NCBI)PRRG1
Genatlas (Paris)PRRG1
WikiGenes5638
SOURCE (Princeton)PRRG1
Genetics Home Reference (NIH)PRRG1
Genomic and cartography
GoldenPath hg38 (UCSC)PRRG1  -     chrX:37349275-37457295 +  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRG1  -     Xp21.1   [Description]    (hg19-Feb_2009)
EnsemblPRRG1 - Xp21.1 [CytoView hg19]  PRRG1 - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBIPRRG1 [Mapview hg19]  PRRG1 [Mapview hg38]
OMIM300935   
Gene and transcription
Genbank (Entrez)AF009242 AK312904 BC012608 BC030786 BC041591
RefSeq transcript (Entrez)NM_000950 NM_001142395 NM_001173486 NM_001173489 NM_001173490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRG1
Cluster EST : UnigeneHs.190341 [ NCBI ]
CGAP (NCI)Hs.190341
Alternative Splicing GalleryENSG00000130962
Gene ExpressionPRRG1 [ NCBI-GEO ]   PRRG1 [ EBI - ARRAY_EXPRESS ]   PRRG1 [ SEEK ]   PRRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5638
GTEX Portal (Tissue expression)PRRG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14668   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14668  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14668
Splice isoforms : SwissVarO14668
PhosPhoSitePlusO14668
Domaine pattern : Prosite (Expaxy)GLA_1 (PS00011)    GLA_2 (PS50998)   
Domains : Interpro (EBI)Coagulation_fac_subgr_Gla_dom    GLA_domain   
Domain families : Pfam (Sanger)Gla (PF00594)   
Domain families : Pfam (NCBI)pfam00594   
Domain families : Smart (EMBL)GLA (SM00069)  
Conserved Domain (NCBI)PRRG1
DMDM Disease mutations5638
Blocks (Seattle)PRRG1
SuperfamilyO14668
Human Protein AtlasENSG00000130962
Peptide AtlasO14668
HPRD05113
IPIIPI00000459   IPI00945174   IPI00945032   IPI00947504   
Protein Interaction databases
DIP (DOE-UCLA)O14668
IntAct (EBI)O14668
FunCoupENSG00000130962
BioGRIDPRRG1
STRING (EMBL)PRRG1
ZODIACPRRG1
Ontologies - Pathways
QuickGOO14668
Ontology : AmiGOcalcium ion binding  extracellular region  integral component of plasma membrane  
Ontology : EGO-EBIcalcium ion binding  extracellular region  integral component of plasma membrane  
NDEx NetworkPRRG1
Atlas of Cancer Signalling NetworkPRRG1
Wikipedia pathwaysPRRG1
Orthology - Evolution
OrthoDB5638
GeneTree (enSembl)ENSG00000130962
Phylogenetic Trees/Animal Genes : TreeFamPRRG1
HOVERGENO14668
HOGENOMO14668
Homologs : HomoloGenePRRG1
Homology/Alignments : Family Browser (UCSC)PRRG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRG1
dbVarPRRG1
ClinVarPRRG1
1000_GenomesPRRG1 
Exome Variant ServerPRRG1
ExAC (Exome Aggregation Consortium)PRRG1 (select the gene name)
Genetic variants : HAPMAP5638
Genomic Variants (DGV)PRRG1 [DGVbeta]
DECIPHERPRRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRG1 
Mutations
ICGC Data PortalPRRG1 
TCGA Data PortalPRRG1 
Broad Tumor PortalPRRG1
OASIS PortalPRRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PRRG1
DgiDB (Drug Gene Interaction Database)PRRG1
DoCM (Curated mutations)PRRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRG1 (select a term)
intoGenPRRG1
Cancer3DPRRG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300935   
Orphanet
MedgenPRRG1
Genetic Testing Registry PRRG1
NextProtO14668 [Medical]
TSGene5638
GENETestsPRRG1
Target ValidationPRRG1
Huge Navigator PRRG1 [HugePedia]
snp3D : Map Gene to Disease5638
BioCentury BCIQPRRG1
ClinGenPRRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5638
Chemical/Pharm GKB GenePA33824
Clinical trialPRRG1
Miscellaneous
canSAR (ICR)PRRG1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRG1
EVEXPRRG1
GoPubMedPRRG1
iHOPPRRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:27 CEST 2017

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