Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRRG2 (proline rich and Gla domain 2)

Identity

Alias (NCBI)PRGP2
HGNC (Hugo) PRRG2
HGNC Alias symbPRGP2
HGNC Previous nameproline-rich Gla (G-carboxyglutamic acid) polypeptide 2
LocusID (NCBI) 5639
Atlas_Id 54559
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49581316 and ends at 49591004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRR12 (19q13.33) / PRRG2 (19q13.33)PRRG2 (19q13.33) / CCDC155 (19q13.33)PRRG2 (19q13.33) / FCGRT (19q13.33)
ZNF671 (19q13.43) / PRRG2 (19q13.33)PRR12 19q13.33 / PRRG2 19q13.33PRRG2 19q13.33 / CCDC155 19q13.33
PRRG2 19q13.33 / FCGRT 19q13.33ZNF671 19q13.43 / PRRG2 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PRRG2   9470
Cards
Entrez_Gene (NCBI)PRRG2    proline rich and Gla domain 2
AliasesPRGP2
GeneCards (Weizmann)PRRG2
Ensembl hg19 (Hinxton)ENSG00000126460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126460 [Gene_View]  ENSG00000126460 [Sequence]  chr19:49581316-49591004 [Contig_View]  PRRG2 [Vega]
ICGC DataPortalENSG00000126460
TCGA cBioPortalPRRG2
AceView (NCBI)PRRG2
Genatlas (Paris)PRRG2
SOURCE (Princeton)PRRG2
Genetics Home Reference (NIH)PRRG2
Genomic and cartography
GoldenPath hg38 (UCSC)PRRG2  -     chr19:49581316-49591004 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRG2  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathPRRG2 - 19q13.33 [CytoView hg19]  PRRG2 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000126460
genome Data Viewer NCBIPRRG2 [Mapview hg19]  
OMIM604429   
Gene and transcription
Genbank (Entrez)AF009243 BC026032 CB851486 CD013954 CD609900
RefSeq transcript (Entrez)NM_000951 NM_001316335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRG2
Alternative Splicing GalleryENSG00000126460
Gene ExpressionPRRG2 [ NCBI-GEO ]   PRRG2 [ EBI - ARRAY_EXPRESS ]   PRRG2 [ SEEK ]   PRRG2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRG2 [ Firebrowse - Broad ]
GenevisibleExpression of PRRG2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5639
GTEX Portal (Tissue expression)PRRG2
Human Protein AtlasENSG00000126460-PRRG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14669   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14669  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14669
Splice isoforms : SwissVarO14669
PhosPhoSitePlusO14669
Domaine pattern : Prosite (Expaxy)GLA_1 (PS00011)    GLA_2 (PS50998)   
Domains : Interpro (EBI)Coagulation_fac-like_Gla_dom    GLA-like_dom_SF    GLA_domain   
Domain families : Pfam (Sanger)Gla (PF00594)   
Domain families : Pfam (NCBI)pfam00594   
Domain families : Smart (EMBL)GLA (SM00069)  
Conserved Domain (NCBI)PRRG2
Blocks (Seattle)PRRG2
SuperfamilyO14669
Human Protein Atlas [tissue]ENSG00000126460-PRRG2 [tissue]
Peptide AtlasO14669
HPRD09189
IPIIPI00000460   IPI01010063   
Protein Interaction databases
DIP (DOE-UCLA)O14669
IntAct (EBI)O14669
BioGRIDPRRG2
STRING (EMBL)PRRG2
ZODIACPRRG2
Ontologies - Pathways
QuickGOO14669
Ontology : AmiGOcalcium ion binding  protein binding  extracellular space  plasma membrane  integral component of plasma membrane  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular space  plasma membrane  integral component of plasma membrane  
NDEx NetworkPRRG2
Atlas of Cancer Signalling NetworkPRRG2
Wikipedia pathwaysPRRG2
Orthology - Evolution
OrthoDB5639
GeneTree (enSembl)ENSG00000126460
Phylogenetic Trees/Animal Genes : TreeFamPRRG2
HOGENOMO14669
Homologs : HomoloGenePRRG2
Homology/Alignments : Family Browser (UCSC)PRRG2
Gene fusions - Rearrangements
Fusion : MitelmanPRR12/PRRG2 [19q13.33/19q13.33]  
Fusion : MitelmanPRRG2/CCDC155 [19q13.33/19q13.33]  
Fusion : MitelmanPRRG2/FCGRT [19q13.33/19q13.33]  
Fusion : MitelmanZNF671/PRRG2 [19q13.43/19q13.33]  
Fusion PortalPRR12 19q13.33 PRRG2 19q13.33 BRCA
Fusion PortalPRRG2 19q13.33 CCDC155 19q13.33 BRCA
Fusion PortalPRRG2 19q13.33 FCGRT 19q13.33 BRCA
Fusion PortalZNF671 19q13.43 PRRG2 19q13.33 BRCA
Fusion : QuiverPRRG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRG2 [hg38]
dbVarPRRG2
ClinVarPRRG2
MonarchPRRG2
1000_GenomesPRRG2 
Exome Variant ServerPRRG2
GNOMAD BrowserENSG00000126460
Varsome BrowserPRRG2
Genomic Variants (DGV)PRRG2 [DGVbeta]
DECIPHERPRRG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRG2 
Mutations
ICGC Data PortalPRRG2 
TCGA Data PortalPRRG2 
Broad Tumor PortalPRRG2
OASIS PortalPRRG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRG2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRRG2
Mutations and Diseases : HGMDPRRG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRRG2
DgiDB (Drug Gene Interaction Database)PRRG2
DoCM (Curated mutations)PRRG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRG2 (select a term)
intoGenPRRG2
Cancer3DPRRG2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604429   
Orphanet
DisGeNETPRRG2
MedgenPRRG2
Genetic Testing Registry PRRG2
NextProtO14669 [Medical]
GENETestsPRRG2
Target ValidationPRRG2
Huge Navigator PRRG2 [HugePedia]
ClinGenPRRG2
Clinical trials, drugs, therapy
MyCancerGenomePRRG2
Protein Interactions : CTD
Pharm GKB GenePA33825
PharosO14669
Clinical trialPRRG2
Miscellaneous
canSAR (ICR)PRRG2 (select the gene name)
HarmonizomePRRG2
DataMed IndexPRRG2
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRRG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:41:17 CET 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.