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PRRG3 (proline rich and Gla domain 3)

Identity

Alias_namesproline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
Alias_symbol (synonym)TMG3
Other aliasPRGP3
HGNC (Hugo) PRRG3
LocusID (NCBI) 79057
Atlas_Id 72294
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 151695258 and ends at 151701591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRG3   30798
Cards
Entrez_Gene (NCBI)PRRG3  79057  proline rich and Gla domain 3
AliasesPRGP3; TMG3
GeneCards (Weizmann)PRRG3
Ensembl hg19 (Hinxton)ENSG00000130032 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130032 [Gene_View]  chrX:151695258-151701591 [Contig_View]  PRRG3 [Vega]
ICGC DataPortalENSG00000130032
TCGA cBioPortalPRRG3
AceView (NCBI)PRRG3
Genatlas (Paris)PRRG3
WikiGenes79057
SOURCE (Princeton)PRRG3
Genetics Home Reference (NIH)PRRG3
Genomic and cartography
GoldenPath hg38 (UCSC)PRRG3  -     chrX:151695258-151701591 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRG3  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblPRRG3 - Xq28 [CytoView hg19]  PRRG3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIPRRG3 [Mapview hg19]  PRRG3 [Mapview hg38]
OMIM300685   
Gene and transcription
Genbank (Entrez)AF326350 AK074574 AK125352 BC128256 BC128409
RefSeq transcript (Entrez)NM_024082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRG3
Cluster EST : UnigeneHs.592236 [ NCBI ]
CGAP (NCI)Hs.592236
Alternative Splicing GalleryENSG00000130032
Gene ExpressionPRRG3 [ NCBI-GEO ]   PRRG3 [ EBI - ARRAY_EXPRESS ]   PRRG3 [ SEEK ]   PRRG3 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79057
GTEX Portal (Tissue expression)PRRG3
Human Protein AtlasENSG00000130032-PRRG3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZD7
Splice isoforms : SwissVarQ9BZD7
PhosPhoSitePlusQ9BZD7
Domaine pattern : Prosite (Expaxy)GLA_1 (PS00011)    GLA_2 (PS50998)   
Domains : Interpro (EBI)Coagulation_fac_subgr_Gla_dom    GLA_domain   
Domain families : Pfam (Sanger)Gla (PF00594)   
Domain families : Pfam (NCBI)pfam00594   
Domain families : Smart (EMBL)GLA (SM00069)  
Conserved Domain (NCBI)PRRG3
DMDM Disease mutations79057
Blocks (Seattle)PRRG3
SuperfamilyQ9BZD7
Human Protein Atlas [tissue]ENSG00000130032-PRRG3 [tissue]
Peptide AtlasQ9BZD7
HPRD06742
IPIIPI00288993   IPI00647180   IPI00644612   IPI00645988   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZD7
IntAct (EBI)Q9BZD7
FunCoupENSG00000130032
BioGRIDPRRG3
STRING (EMBL)PRRG3
ZODIACPRRG3
Ontologies - Pathways
QuickGOQ9BZD7
Ontology : AmiGOcalcium ion binding  extracellular region  biological_process  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  extracellular region  biological_process  integral component of membrane  
NDEx NetworkPRRG3
Atlas of Cancer Signalling NetworkPRRG3
Wikipedia pathwaysPRRG3
Orthology - Evolution
OrthoDB79057
GeneTree (enSembl)ENSG00000130032
Phylogenetic Trees/Animal Genes : TreeFamPRRG3
HOVERGENQ9BZD7
HOGENOMQ9BZD7
Homologs : HomoloGenePRRG3
Homology/Alignments : Family Browser (UCSC)PRRG3
Gene fusions - Rearrangements
Tumor Fusion PortalPRRG3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRG3
dbVarPRRG3
ClinVarPRRG3
1000_GenomesPRRG3 
Exome Variant ServerPRRG3
ExAC (Exome Aggregation Consortium)ENSG00000130032
GNOMAD BrowserENSG00000130032
Genetic variants : HAPMAP79057
Genomic Variants (DGV)PRRG3 [DGVbeta]
DECIPHERPRRG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRG3 
Mutations
ICGC Data PortalPRRG3 
TCGA Data PortalPRRG3 
Broad Tumor PortalPRRG3
OASIS PortalPRRG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PRRG3
DgiDB (Drug Gene Interaction Database)PRRG3
DoCM (Curated mutations)PRRG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRG3 (select a term)
intoGenPRRG3
Cancer3DPRRG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300685   
Orphanet
DisGeNETPRRG3
MedgenPRRG3
Genetic Testing Registry PRRG3
NextProtQ9BZD7 [Medical]
TSGene79057
GENETestsPRRG3
Target ValidationPRRG3
Huge Navigator PRRG3 [HugePedia]
snp3D : Map Gene to Disease79057
BioCentury BCIQPRRG3
ClinGenPRRG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79057
Chemical/Pharm GKB GenePA134963933
Clinical trialPRRG3
Miscellaneous
canSAR (ICR)PRRG3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRG3
EVEXPRRG3
GoPubMedPRRG3
iHOPPRRG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:26 CET 2017

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