Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRRT1 (proline rich transmembrane protein 1)

Identity

Alias_namesC6orf31
chromosome 6 open reading frame 31
proline-rich transmembrane protein 1
Alias_symbol (synonym)NG5
IFITMD7
Other aliasDSPD1
HGNC (Hugo) PRRT1
LocusID (NCBI) 80863
Atlas_Id 72296
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32148363 and ends at 32151943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRRT1 (6p21.32) / LOC100507433 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRT1   13943
Cards
Entrez_Gene (NCBI)PRRT1  80863  proline rich transmembrane protein 1
AliasesC6orf31; DSPD1; IFITMD7; NG5
GeneCards (Weizmann)PRRT1
Ensembl hg19 (Hinxton)ENSG00000204314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204314 [Gene_View]  chr6:32148363-32151943 [Contig_View]  PRRT1 [Vega]
ICGC DataPortalENSG00000204314
TCGA cBioPortalPRRT1
AceView (NCBI)PRRT1
Genatlas (Paris)PRRT1
WikiGenes80863
SOURCE (Princeton)PRRT1
Genetics Home Reference (NIH)PRRT1
Genomic and cartography
GoldenPath hg38 (UCSC)PRRT1  -     chr6:32148363-32151943 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRT1  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblPRRT1 - 6p21.32 [CytoView hg19]  PRRT1 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIPRRT1 [Mapview hg19]  PRRT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085841 AK054885 AK123424 BC013201 BC063046
RefSeq transcript (Entrez)NM_030651
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)PRRT1
Cluster EST : UnigeneHs.699821 [ NCBI ]
CGAP (NCI)Hs.699821
Alternative Splicing GalleryENSG00000204314
Gene ExpressionPRRT1 [ NCBI-GEO ]   PRRT1 [ EBI - ARRAY_EXPRESS ]   PRRT1 [ SEEK ]   PRRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80863
GTEX Portal (Tissue expression)PRRT1
Human Protein AtlasENSG00000204314-PRRT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99946   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99946  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99946
Splice isoforms : SwissVarQ99946
PhosPhoSitePlusQ99946
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)PRRT1
DMDM Disease mutations80863
Blocks (Seattle)PRRT1
SuperfamilyQ99946
Human Protein Atlas [tissue]ENSG00000204314-PRRT1 [tissue]
Peptide AtlasQ99946
HPRD10794
IPIIPI00043810   IPI00215810   IPI00795900   
Protein Interaction databases
DIP (DOE-UCLA)Q99946
IntAct (EBI)Q99946
FunCoupENSG00000204314
BioGRIDPRRT1
STRING (EMBL)PRRT1
ZODIACPRRT1
Ontologies - Pathways
QuickGOQ99946
Ontology : AmiGOplasma membrane  response to biotic stimulus  integral component of membrane  cell junction  synapse  
Ontology : EGO-EBIplasma membrane  response to biotic stimulus  integral component of membrane  cell junction  synapse  
NDEx NetworkPRRT1
Atlas of Cancer Signalling NetworkPRRT1
Wikipedia pathwaysPRRT1
Orthology - Evolution
OrthoDB80863
GeneTree (enSembl)ENSG00000204314
Phylogenetic Trees/Animal Genes : TreeFamPRRT1
HOVERGENQ99946
HOGENOMQ99946
Homologs : HomoloGenePRRT1
Homology/Alignments : Family Browser (UCSC)PRRT1
Gene fusions - Rearrangements
Fusion: Tumor Portal PRRT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRT1
dbVarPRRT1
ClinVarPRRT1
1000_GenomesPRRT1 
Exome Variant ServerPRRT1
ExAC (Exome Aggregation Consortium)ENSG00000204314
GNOMAD BrowserENSG00000204314
Genetic variants : HAPMAP80863
Genomic Variants (DGV)PRRT1 [DGVbeta]
DECIPHERPRRT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRT1 
Mutations
ICGC Data PortalPRRT1 
TCGA Data PortalPRRT1 
Broad Tumor PortalPRRT1
OASIS PortalPRRT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRT1
BioMutasearch PRRT1
DgiDB (Drug Gene Interaction Database)PRRT1
DoCM (Curated mutations)PRRT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRT1 (select a term)
intoGenPRRT1
Cancer3DPRRT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRRT1
Genetic Testing Registry PRRT1
NextProtQ99946 [Medical]
TSGene80863
GENETestsPRRT1
Target ValidationPRRT1
Huge Navigator PRRT1 [HugePedia]
snp3D : Map Gene to Disease80863
BioCentury BCIQPRRT1
ClinGenPRRT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80863
Chemical/Pharm GKB GenePA25932
Clinical trialPRRT1
Miscellaneous
canSAR (ICR)PRRT1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRT1
EVEXPRRT1
GoPubMedPRRT1
iHOPPRRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:23:50 CET 2017

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