Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PRRT3 (proline rich transmembrane protein 3)

Identity

Alias_namesproline-rich transmembrane protein 3
Alias_symbol (synonym)FLJ33674
Other alias-
HGNC (Hugo) PRRT3
LocusID (NCBI) 285368
Atlas_Id 72298
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9948581 and ends at 9952415 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRRT3   26591
Cards
Entrez_Gene (NCBI)PRRT3  285368  proline rich transmembrane protein 3
Aliases
GeneCards (Weizmann)PRRT3
Ensembl hg19 (Hinxton)ENSG00000163704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163704 [Gene_View]  chr3:9948581-9952415 [Contig_View]  PRRT3 [Vega]
ICGC DataPortalENSG00000163704
TCGA cBioPortalPRRT3
AceView (NCBI)PRRT3
Genatlas (Paris)PRRT3
WikiGenes285368
SOURCE (Princeton)PRRT3
Genetics Home Reference (NIH)PRRT3
Genomic and cartography
GoldenPath hg38 (UCSC)PRRT3  -     chr3:9948581-9952415 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRT3  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblPRRT3 - 3p25.3 [CytoView hg19]  PRRT3 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIPRRT3 [Mapview hg19]  PRRT3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090993 AK296317 AY358158 BC040508 BC089447
RefSeq transcript (Entrez)NM_001318871 NM_207351
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRT3
Cluster EST : UnigeneHs.598147 [ NCBI ]
CGAP (NCI)Hs.598147
Alternative Splicing GalleryENSG00000163704
Gene ExpressionPRRT3 [ NCBI-GEO ]   PRRT3 [ EBI - ARRAY_EXPRESS ]   PRRT3 [ SEEK ]   PRRT3 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285368
GTEX Portal (Tissue expression)PRRT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5FWE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5FWE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5FWE3
Splice isoforms : SwissVarQ5FWE3
PhosPhoSitePlusQ5FWE3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRRT3
DMDM Disease mutations285368
Blocks (Seattle)PRRT3
SuperfamilyQ5FWE3
Human Protein AtlasENSG00000163704
Peptide AtlasQ5FWE3
HPRD16935
IPIIPI00552905   IPI00788160   IPI00788096   IPI00909748   
Protein Interaction databases
DIP (DOE-UCLA)Q5FWE3
IntAct (EBI)Q5FWE3
FunCoupENSG00000163704
BioGRIDPRRT3
STRING (EMBL)PRRT3
ZODIACPRRT3
Ontologies - Pathways
QuickGOQ5FWE3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPRRT3
Atlas of Cancer Signalling NetworkPRRT3
Wikipedia pathwaysPRRT3
Orthology - Evolution
OrthoDB285368
GeneTree (enSembl)ENSG00000163704
Phylogenetic Trees/Animal Genes : TreeFamPRRT3
HOVERGENQ5FWE3
HOGENOMQ5FWE3
Homologs : HomoloGenePRRT3
Homology/Alignments : Family Browser (UCSC)PRRT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRT3
dbVarPRRT3
ClinVarPRRT3
1000_GenomesPRRT3 
Exome Variant ServerPRRT3
ExAC (Exome Aggregation Consortium)PRRT3 (select the gene name)
Genetic variants : HAPMAP285368
Genomic Variants (DGV)PRRT3 [DGVbeta]
DECIPHERPRRT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRT3 
Mutations
ICGC Data PortalPRRT3 
TCGA Data PortalPRRT3 
Broad Tumor PortalPRRT3
OASIS PortalPRRT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRRT3
DgiDB (Drug Gene Interaction Database)PRRT3
DoCM (Curated mutations)PRRT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRT3 (select a term)
intoGenPRRT3
Cancer3DPRRT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRRT3
Genetic Testing Registry PRRT3
NextProtQ5FWE3 [Medical]
TSGene285368
GENETestsPRRT3
Target ValidationPRRT3
Huge Navigator PRRT3 [HugePedia]
snp3D : Map Gene to Disease285368
BioCentury BCIQPRRT3
ClinGenPRRT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285368
Chemical/Pharm GKB GenePA142671133
Clinical trialPRRT3
Miscellaneous
canSAR (ICR)PRRT3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRT3
EVEXPRRT3
GoPubMedPRRT3
iHOPPRRT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:27 CEST 2017
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